miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48630_gra-miR157a:pmrd
Length = 101
Score = 200 bits (101), Expect = 1e-52
Identities = 101/101 (100%)
Strand = Plus / Plus
Query: 1 gttgttgacagaagatagagagcacagatgatggtgtgcaattaggagtcttgaagcaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gttgttgacagaagatagagagcacagatgatggtgtgcaattaggagtcttgaagcaat 60
Query: 61 gcatcccactcctttgtgctctttatgcttctgtcatcacc 101
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gcatcccactcctttgtgctctttatgcttctgtcatcacc 101
>51600_ptc-miR156j:pmrd
Length = 100
Score = 81.8 bits (41), Expect = 9e-17
Identities = 85/100 (85%), Gaps = 11/100 (11%)
Strand = Plus / Plus
Query: 1 gttgttgacagaagatagagagcacagatgatggtgtgcaattaggagtcttgaagcaat 60
||||||||||||||||||||||||||||||||| | |||||| ||| |||
Sbjct: 7 gttgttgacagaagatagagagcacagatgatgatatgcaat--ggactct--------- 55
Query: 61 gcatcccactcctttgtgctctttatgcttctgtcatcac 100
|||||||||||||||||||||| |||||||||||||||||
Sbjct: 56 gcatcccactcctttgtgctctctatgcttctgtcatcac 95
>52045_ptc-miRf10223-akr:pmrd
Length = 86
Score = 75.8 bits (38), Expect = 5e-15
Identities = 82/97 (84%), Gaps = 11/97 (11%)
Strand = Plus / Plus
Query: 3 tgttgacagaagatagagagcacagatgatggtgtgcaattaggagtcttgaagcaatgc 62
||||||||||||||||||||||||||||||| | |||||| ||| ||| ||
Sbjct: 1 tgttgacagaagatagagagcacagatgatgatatgcaat--ggactct---------gc 49
Query: 63 atcccactcctttgtgctctttatgcttctgtcatca 99
|||||||||||||||||||| ||||||||||||||||
Sbjct: 50 atcccactcctttgtgctctctatgcttctgtcatca 86
>48631_gra-miR157b:pmrd
Length = 91
Score = 73.8 bits (37), Expect = 2e-14
Identities = 37/37 (100%)
Strand = Plus / Plus
Query: 1 gttgttgacagaagatagagagcacagatgatggtgt 37
|||||||||||||||||||||||||||||||||||||
Sbjct: 1 gttgttgacagaagatagagagcacagatgatggtgt 37
Score = 73.8 bits (37), Expect = 2e-14
Identities = 40/41 (97%)
Strand = Plus / Plus
Query: 59 atgcatcccactcctttgtgctctttatgcttctgtcatca 99
|||||||||||||||||||||||| ||||||||||||||||
Sbjct: 49 atgcatcccactcctttgtgctctctatgcttctgtcatca 89
>54772_vvi-miR156g:pmrd
Length = 103
Score = 71.9 bits (36), Expect = 8e-14
Identities = 39/40 (97%)
Strand = Plus / Plus
Query: 1 gttgttgacagaagatagagagcacagatgatggtgtgca 40
||||||||||||||||||||||||||||||||| ||||||
Sbjct: 7 gttgttgacagaagatagagagcacagatgatgatgtgca 46
>54774_vvi-miR156i:pmrd
Length = 103
Score = 65.9 bits (33), Expect = 5e-12
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 1 gttgttgacagaagatagagagcacagatgatg 33
|||||||||||||||||||||||||||||||||
Sbjct: 7 gttgttgacagaagatagagagcacagatgatg 39
Score = 58.0 bits (29), Expect = 1e-09
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 61 gcatcccactcctttgtgctctttatgcttctgtcatcacc 101
||||| |||||||||||||||| ||| ||||||||||||||
Sbjct: 55 gcatctcactcctttgtgctctctattcttctgtcatcacc 95
>51599_ptc-miR156i:pmrd
Length = 99
Score = 65.9 bits (33), Expect = 5e-12
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 1 gttgttgacagaagatagagagcacagatgatg 33
|||||||||||||||||||||||||||||||||
Sbjct: 7 gttgttgacagaagatagagagcacagatgatg 39
Score = 54.0 bits (27), Expect = 2e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 67 cactcctttgtgctctttatgcttctgtcatcacc 101
|||||||||||||||| |||||||||| |||||||
Sbjct: 62 cactcctttgtgctctctatgcttctgccatcacc 96
>51597_ptc-miR156g:pmrd
Length = 103
Score = 65.9 bits (33), Expect = 5e-12
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 1 gttgttgacagaagatagagagcacagatgatg 33
|||||||||||||||||||||||||||||||||
Sbjct: 7 gttgttgacagaagatagagagcacagatgatg 39
Score = 52.0 bits (26), Expect = 8e-08
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 60 tgcatcccactcctttgtgctctttatgcttctgtcatcacc 101
|||||| |||||||||||||||| || ||||||||||||||
Sbjct: 58 tgcatctcactcctttgtgctctctagtcttctgtcatcacc 99
>48695_mtr-miR156e:pmrd
Length = 172
Score = 65.9 bits (33), Expect = 5e-12
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 1 gttgttgacagaagatagagagcacagatgatg 33
|||||||||||||||||||||||||||||||||
Sbjct: 2 gttgttgacagaagatagagagcacagatgatg 34
Score = 61.9 bits (31), Expect = 8e-11
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 67 cactcctttgtgctctttatgcttctgtcatcacc 101
|||||||||||||||| ||||||||||||||||||
Sbjct: 138 cactcctttgtgctctctatgcttctgtcatcacc 172
>48531_gma-miR156d:pmrd
Length = 151
Score = 65.9 bits (33), Expect = 5e-12
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 1 gttgttgacagaagatagagagcacagatgatg 33
|||||||||||||||||||||||||||||||||
Sbjct: 17 gttgttgacagaagatagagagcacagatgatg 49
Score = 52.0 bits (26), Expect = 8e-08
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 68 actcctttgtgctctttatgcttctgtcatcacc 101
||||||||||||||| ||| ||||||||||||||
Sbjct: 103 actcctttgtgctctctatacttctgtcatcacc 136
>48697_mtr-miR156h:pmrd
Length = 94
Score = 61.9 bits (31), Expect = 8e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 3 tgttgacagaagatagagagcacagatgatg 33
|||||||||||||||||||||||||||||||
Sbjct: 4 tgttgacagaagatagagagcacagatgatg 34
Score = 58.0 bits (29), Expect = 1e-09
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 61 gcatcccactcctttgtgctctttatgcttctgtcatcacc 101
||||| || ||||||||||||||||| ||||||||||||||
Sbjct: 54 gcatctcattcctttgtgctctttattcttctgtcatcacc 94
>46924_ath-miR157a:pmrd
Length = 98
Score = 61.9 bits (31), Expect = 8e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 3 tgttgacagaagatagagagcacagatgatg 33
|||||||||||||||||||||||||||||||
Sbjct: 2 tgttgacagaagatagagagcacagatgatg 32
>46862_aqc-miR156b:pmrd
Length = 83
Score = 61.9 bits (31), Expect = 8e-11
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 60 tgcatcccactcctttgtgctctttatgcttctgtcatc 98
|||||| |||||||||||||||| |||||||||||||||
Sbjct: 45 tgcatctcactcctttgtgctctctatgcttctgtcatc 83
Score = 56.0 bits (28), Expect = 5e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 6 tgacagaagatagagagcacagatgatg 33
||||||||||||||||||||||||||||
Sbjct: 1 tgacagaagatagagagcacagatgatg 28
>46925_ath-miR157b:pmrd
Length = 132
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 3 tgttgacagaagatagagagcacagatgat 32
||||||||||||||||||||||||||||||
Sbjct: 17 tgttgacagaagatagagagcacagatgat 46
Score = 44.1 bits (22), Expect = 2e-05
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 68 actcctttgtgctctttatgcttctgtcatcacc 101
||||||||||||||| || ||||||||||||||
Sbjct: 80 actcctttgtgctctctagccttctgtcatcacc 113
>48790_nta-miR157:pmrd
Length = 131
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 5 ttgacagaagatagagagcacagatgatg 33
|||||||||||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagcacagatgatg 29
>48532_gma-miR156e:pmrd
Length = 124
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 3 tgttgacagaagatagagagcacagatgatg 33
||||||||||||||||||||||| |||||||
Sbjct: 19 tgttgacagaagatagagagcactgatgatg 49
Score = 46.1 bits (23), Expect = 5e-06
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 61 gcatcccactcctttgtgctctttatgcttctgtcatca 99
||||| |||||||||||||||| || ||||||||||||
Sbjct: 69 gcatctcactcctttgtgctctctagtcttctgtcatca 107
>51598_ptc-miR156h:pmrd
Length = 103
Score = 52.0 bits (26), Expect = 8e-08
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 60 tgcatcccactcctttgtgctctttatgcttctgtcatcacc 101
|||||| |||||||||||||||| || ||||||||||||||
Sbjct: 58 tgcatctcactcctttgtgctctctagtcttctgtcatcacc 99
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 3 tgttgacagaagatagagagcac 25
|||||||||||||||||||||||
Sbjct: 9 tgttgacagaagatagagagcac 31
>46861_aqc-miR156a:pmrd
Length = 81
Score = 52.0 bits (26), Expect = 8e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 6 tgacagaagatagagagcacagatga 31
||||||||||||||||||||||||||
Sbjct: 1 tgacagaagatagagagcacagatga 26
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 72 ctttgtgctctttatgcttctgtca 96
||||||||||| |||||||||||||
Sbjct: 55 ctttgtgctctctatgcttctgtca 79
>48696_mtr-miR156f:pmrd
Length = 94
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 2 ttgttgacagaagatagagagcaca 26
|||||||||||||||||||||||||
Sbjct: 3 ttgttgacagaagatagagagcaca 27
>48537_gma-miR157c:pmrd
Length = 84
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 5 ttgacagaagatagagagcacagatgatg 33
||||||||||||||||||||| |||||||
Sbjct: 84 ttgacagaagatagagagcactgatgatg 56
Score = 40.1 bits (20), Expect = 3e-04
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 61 gcatcccactcctttgtgctctttatgcttctgtca 96
||||| |||||||||||||||| || |||||||||
Sbjct: 36 gcatctcactcctttgtgctctctagtcttctgtca 1
>48393_bra-miR157a:pmrd
Length = 149
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 gttgttgacagaagatagagagcac 25
|||||||||||||||||||||||||
Sbjct: 10 gttgttgacagaagatagagagcac 34
>48384_bol-miR157a:pmrd
Length = 106
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 gttgttgacagaagatagagagcac 25
|||||||||||||||||||||||||
Sbjct: 2 gttgttgacagaagatagagagcac 26
>48338_bna-miR156c:pmrd
Length = 155
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 gttgttgacagaagatagagagcac 25
|||||||||||||||||||||||||
Sbjct: 14 gttgttgacagaagatagagagcac 38
>48337_bna-miR156b:pmrd
Length = 208
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 gttgttgacagaagatagagagcac 25
|||||||||||||||||||||||||
Sbjct: 21 gttgttgacagaagatagagagcac 45
>46926_ath-miR157c:pmrd
Length = 217
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 gttgttgacagaagatagagagcac 25
|||||||||||||||||||||||||
Sbjct: 20 gttgttgacagaagatagagagcac 44
>54771_vvi-miR156f:pmrd
Length = 105
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 3 tgttgacagaagatagagagcaca 26
||||||||||||||||||||||||
Sbjct: 9 tgttgacagaagatagagagcaca 32
>48642_han-miR157a:pmrd
Length = 86
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 5 ttgacagaagatagagagcacaga 28
||||||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagcacaga 24
Score = 46.1 bits (23), Expect = 5e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 67 cactcctttgtgctctttatgcttctgtcat 97
|||||||| ||||||| ||||||||||||||
Sbjct: 56 cactccttcgtgctctctatgcttctgtcat 86
>48530_gma-miR156c:pmrd
Length = 185
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 3 tgttgacagaagatagagagcaca 26
||||||||||||||||||||||||
Sbjct: 144 tgttgacagaagatagagagcaca 167
>46927_ath-miR157d:pmrd
Length = 221
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 70 tcctttgtgctctttatgcttctgtcatcacc 101
|||| |||||||| ||||||||||||||||||
Sbjct: 167 tcctatgtgctctctatgcttctgtcatcacc 198
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 1 gttgttgacagaagatagagagcac 25
|||| ||||||||||||||||||||
Sbjct: 19 gttgctgacagaagatagagagcac 43
>54570_smo-miR156b:pmrd
Length = 112
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 tgacagaagatagagagcacaga 28
|||||||||||||||||||||||
Sbjct: 12 tgacagaagatagagagcacaga 34
>52807_ptc-miRf10985-akr:pmrd
Length = 87
Score = 46.1 bits (23), Expect = 5e-06
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 60 tgcatcccactcctttgtgctctttatgcttctgtcatc 98
|||||| |||||||||||||||| || |||||||||||
Sbjct: 49 tgcatctcactcctttgtgctctctagtcttctgtcatc 87
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 4 gttgacagaagatagagagcac 25
||||||||||||||||||||||
Sbjct: 1 gttgacagaagatagagagcac 22
>48675_lja-miR157a:pmrd
Length = 58
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 5 ttgacagaagatagagagcaca 26
||||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagcaca 22
>54661_stu-miR157a:pmrd
Length = 91
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 5 ttgacagaagatagagagcac 25
|||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagcac 21
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 73 tttgtgctctttatgcttctgtcat 97
|||||||||| ||||||||||||||
Sbjct: 67 tttgtgctctctatgcttctgtcat 91
>54534_sly-miR156c:pmrd
Length = 83
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 5 ttgacagaagatagagagcac 25
|||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagcac 21
>54533_sly-miR156b:pmrd
Length = 84
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 5 ttgacagaagatagagagcac 25
|||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagcac 21
>54532_sly-miR156a:pmrd
Length = 100
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 5 ttgacagaagatagagagcac 25
|||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagcac 21
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 73 tttgtgctctttatgcttctgtcat 97
|||||||||| ||||||||||||||
Sbjct: 76 tttgtgctctctatgcttctgtcat 100
>51552_pta-miR156b:pmrd
Length = 83
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 6 tgacagaagatagagagcaca 26
|||||||||||||||||||||
Sbjct: 3 tgacagaagatagagagcaca 23
>51551_pta-miR156a:pmrd
Length = 83
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 6 tgacagaagatagagagcaca 26
|||||||||||||||||||||
Sbjct: 3 tgacagaagatagagagcaca 23
>54537_sly-miR157c:pmrd
Length = 123
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 5 ttgacagaagatagagagca 24
||||||||||||||||||||
Sbjct: 103 ttgacagaagatagagagca 122
>54536_sly-miR157b:pmrd
Length = 430
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 5 ttgacagaagatagagagca 24
||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagca 20
>54535_sly-miR157a:pmrd
Length = 53
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 5 ttgacagaagatagagagca 24
||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagca 20
>51323_pco-miR157:pmrd
Length = 184
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 5 ttgacagaagatagagagca 24
||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagca 20
>48677_lja-miR157c:pmrd
Length = 460
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 5 ttgacagaagatagagagca 24
||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagca 20
>48670_ini-miR157b:pmrd
Length = 183
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 5 ttgacagaagatagagagca 24
||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagca 20
>48669_ini-miR157a:pmrd
Length = 126
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 5 ttgacagaagatagagagca 24
||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagca 20
>48668_iba-miR157:pmrd
Length = 283
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 5 ttgacagaagatagagagca 24
||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagca 20
>48529_gma-miR156b:pmrd
Length = 120
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 3 tgttgacagaagatagagagcaca 26
||||||||||||| ||||||||||
Sbjct: 18 tgttgacagaagagagagagcaca 41
>48305_bdi-miR156:pmrd
Length = 147
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 4 gttgacagaagatagagagcacag 27
|||||||||||| |||||||||||
Sbjct: 99 gttgacagaagagagagagcacag 122
>46917_ath-miR156h:pmrd
Length = 106
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 3 tgttgacagaagatagagagcaca 26
||||||||||||| ||||||||||
Sbjct: 9 tgttgacagaagaaagagagcaca 32
>46903_aqc-miR529:pmrd
Length = 125
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 3 tgttgacagaagatagagagcaca 26
||||||||||||| ||||||||||
Sbjct: 15 tgttgacagaagagagagagcaca 38
>46857_ahy-miR157k:pmrd
Length = 139
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 3 tgttgacagaagatagagagcaca 26
||||||||||||| ||||||||||
Sbjct: 19 tgttgacagaagagagagagcaca 42
