miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00452;mir-172;CAAP02002749.1/38930-38796 29760:Vitis vinifera
Length = 135
Score = 75.8 bits (38), Expect = 2e-13
Identities = 50/54 (92%)
Strand = Plus / Plus
Query: 95 cctttactcgaaagttacctttcaaatgggaatcttgatgatgctgcatcagca 148
|||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct: 77 cctttactcgaaaggctcctttcatatgggaatcttgatgatgctgcatcagca 130
Score = 44.1 bits (22), Expect = 6e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 11 gtgtttgcagatgcggcatcatcaagattcacaa 44
|||||||| ||||| ||||||| |||||||||||
Sbjct: 1 gtgtttgcggatgcagcatcatgaagattcacaa 34
>RF00452;mir-172;EU549250.1/242-366 3702:Arabidopsis thaliana (thale
cress)
Length = 125
Score = 60.0 bits (30), Expect = 1e-08
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 121 tgggaatcttgatgatgctgcatcagcaaa 150
||||||||||||||||||||||||||||||
Sbjct: 93 tgggaatcttgatgatgctgcatcagcaaa 122
>RF00452;mir-172;AC189648.2/24074-23978 51351:Brassica rapa subsp.
pekinensis
Length = 97
Score = 58.0 bits (29), Expect = 4e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 121 tgggaatcttgatgatgctgcatcagcaa 149
|||||||||||||||||||||||||||||
Sbjct: 65 tgggaatcttgatgatgctgcatcagcaa 93
Score = 44.1 bits (22), Expect = 6e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 15 ttgcagatgcggcatcatcaagattcacaa 44
|||||||||| ||||||| |||||||||||
Sbjct: 5 ttgcagatgcagcatcattaagattcacaa 34
>RF00452;mir-172;AARH01003860.1/86743-86610 3694:Populus trichocarpa
Length = 134
Score = 58.0 bits (29), Expect = 4e-08
Identities = 57/66 (86%), Gaps = 4/66 (6%)
Strand = Plus / Plus
Query: 89 tcacctcctttactcgaaagttacctt----tcaaatgggaatcttgatgatgctgcatc 144
|||||||||||||||||||| | |||| || |||||||||||||||||||||||||
Sbjct: 66 tcacctcctttactcgaaaggttccttaatttctgatgggaatcttgatgatgctgcatc 125
Query: 145 agcaaa 150
|||||
Sbjct: 126 ggcaaa 131
Score = 54.0 bits (27), Expect = 6e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 20 gatgcggcatcatcaagattcacaaacttta 50
||||||||| |||||||||||||||||||||
Sbjct: 10 gatgcggcagcatcaagattcacaaacttta 40
>RF00452;mir-172;BABK01039752.1/451-284 34305:Lotus japonicus
Length = 168
Score = 58.0 bits (29), Expect = 4e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 118 aaatgggaatcttgatgatgctgcatcagcaaa 150
||||| |||||||||||||||||||||||||||
Sbjct: 133 aaatgagaatcttgatgatgctgcatcagcaaa 165
>RF00452;mir-172;ABXC01006306.1/12162-12041 4558:Sorghum bicolor
(sorghum)
Length = 122
Score = 58.0 bits (29), Expect = 4e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 124 gaatcttgatgatgctgcatcagcaaaca 152
|||||||||||||||||||||||||||||
Sbjct: 93 gaatcttgatgatgctgcatcagcaaaca 121
Score = 44.1 bits (22), Expect = 6e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 11 gtgtttgcagatgcggcatcatcaagattc 40
|||||||| ||||| |||||||||||||||
Sbjct: 122 gtgtttgctgatgcagcatcatcaagattc 93
>RF00452;mir-172;EU869069.1/352-463 39946:Oryza sativa Indica Group
Length = 112
Score = 56.0 bits (28), Expect = 2e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 124 gaatcttgatgatgctgcatcagcaaac 151
||||||||||||||||||||||||||||
Sbjct: 83 gaatcttgatgatgctgcatcagcaaac 110
>RF00452;mir-172;ABIM01015449.1/13104-12974 3649:Carica papaya
(papaya)
Length = 131
Score = 54.0 bits (27), Expect = 6e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 118 aaatgggaatcttgatgatgctgcatc 144
|||||||||||||||||||||||||||
Sbjct: 96 aaatgggaatcttgatgatgctgcatc 122
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 22 tgcggcatcatcaagattcacaa 44
|||||||||||||||||||||||
Sbjct: 12 tgcggcatcatcaagattcacaa 34
>RF00452;mir-172;AARH01000428.1/33766-33584 3694:Populus
trichocarpa
Length = 183
Score = 54.0 bits (27), Expect = 6e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 20 gatgcggcatcatcaagattcacaaacttta 50
||||||||||||||||||||||||| |||||
Sbjct: 10 gatgcggcatcatcaagattcacaagcttta 40
Score = 54.0 bits (27), Expect = 6e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 120 atgggaatcttgatgatgctgcatcagcaaa 150
||||||||||||||||||||||||| |||||
Sbjct: 150 atgggaatcttgatgatgctgcatcggcaaa 180
>RF00452;mir-172;AASG02005670.1/14724-14879 3988:Ricinus communis
(castor bean)
Length = 156
Score = 54.0 bits (27), Expect = 6e-07
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 12 tgtttgcagatgcggcatcatcaagattcacaaacttta 50
||||||| |||| |||||||||||||||||||||||||
Sbjct: 2 tgtttgctgatggagcatcatcaagattcacaaacttta 40
Score = 50.1 bits (25), Expect = 1e-05
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 124 gaatcttgatgatgctgcatcagcaaaca 152
|||||||||||||||| ||||||||||||
Sbjct: 30 gaatcttgatgatgctccatcagcaaaca 2
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 120 atgggaatcttgatgatgctgca 142
|||||||||||||||||||||||
Sbjct: 123 atgggaatcttgatgatgctgca 145
>RF00452;mir-172;AASG02019478.1/457-599 3988:Ricinus communis
(castor bean)
Length = 143
Score = 54.0 bits (27), Expect = 6e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 124 gaatcttgatgatgctgcatcagcaaa 150
|||||||||||||||||||||||||||
Sbjct: 114 gaatcttgatgatgctgcatcagcaaa 140
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 20 gatgcggcatcatcaagattcaca 43
||||||||||||||||||||||||
Sbjct: 10 gatgcggcatcatcaagattcaca 33
>RF00452;mir-172;EU945504.1/992-1139 4577:Zea mays
Length = 148
Score = 54.0 bits (27), Expect = 6e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 118 aaatgggaatcttgatgatgctgcatcagca 148
||||| |||||||||||||||||||||||||
Sbjct: 113 aaatgagaatcttgatgatgctgcatcagca 143
>RF00452;mir-172;AASG02011039.1/5310-5468 3988:Ricinus communis
(castor bean)
Length = 159
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 124 gaatcttgatgatgctgcatcagcaa 149
||||||||||||||||||||||||||
Sbjct: 130 gaatcttgatgatgctgcatcagcaa 155
>RF00452;mir-172;BABK01107385.1/174-85 34305:Lotus japonicus
Length = 90
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 124 gaatcttgatgatgctgcatcagcaa 149
||||||||||||||||||||||||||
Sbjct: 61 gaatcttgatgatgctgcatcagcaa 86
>RF00452;mir-172;ABXC01002997.1/14893-14755 4558:Sorghum bicolor
(sorghum)
Length = 139
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 124 gaatcttgatgatgctgcatcagca 148
|||||||||||||||||||||||||
Sbjct: 110 gaatcttgatgatgctgcatcagca 134
>RF00452;mir-172;FM163855.1/191-306 3702:Arabidopsis thaliana (thale
cress)
Length = 116
Score = 48.1 bits (24), Expect = 4e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 118 aaatgggaatcttgatgatgctgcatcagcaa 149
||||| ||||||||||||||||||||| ||||
Sbjct: 81 aaatgagaatcttgatgatgctgcatcggcaa 112
>RF00452;mir-172;AARH01003539.1/168033-168162 3694:Populus
trichocarpa
Length = 130
Score = 48.1 bits (24), Expect = 4e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 12 tgtttgcagatgcggcatcatcaagattcaca 43
||||||||| ||| ||||||||||||||||||
Sbjct: 2 tgtttgcaggtgcagcatcatcaagattcaca 33
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 124 gaatcttgatgatgctgcatcagc 147
||||||||||||||||||||||||
Sbjct: 101 gaatcttgatgatgctgcatcagc 124
Score = 44.1 bits (22), Expect = 6e-04
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 119 aatgggaatcttgatgatgctgcatcagcaaaca 152
|||| ||||||||||||||||||| | |||||||
Sbjct: 35 aatgtgaatcttgatgatgctgcacctgcaaaca 2
>RF00452;mir-172;AARH01004415.1/120029-119901 3694:Populus
trichocarpa
Length = 129
Score = 48.1 bits (24), Expect = 4e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 12 tgtttgcagatgcggcatcatcaagattcaca 43
||||||||| ||| ||||||||||||||||||
Sbjct: 2 tgtttgcaggtgcagcatcatcaagattcaca 33
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 124 gaatcttgatgatgctgcatcagc 147
||||||||||||||||||||||||
Sbjct: 100 gaatcttgatgatgctgcatcagc 123
Score = 44.1 bits (22), Expect = 6e-04
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 119 aatgggaatcttgatgatgctgcatcagcaaaca 152
|||| ||||||||||||||||||| | |||||||
Sbjct: 35 aatgtgaatcttgatgatgctgcacctgcaaaca 2
>RF00452;mir-172;AASG02049897.1/697-856 3988:Ricinus communis
(castor bean)
Length = 160
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 124 gaatcttgatgatgctgcatcagc 147
||||||||||||||||||||||||
Sbjct: 131 gaatcttgatgatgctgcatcagc 154
>RF00452;mir-172;CAAP02002084.1/47016-46906 29760:Vitis vinifera
Length = 111
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 124 gaatcttgatgatgctgcatcagc 147
||||||||||||||||||||||||
Sbjct: 30 gaatcttgatgatgctgcatcagc 7
>RF00452;mir-172;AP003298.3/17210-16973 39947:Oryza sativa Japonica
Group
Length = 238
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 121 tgggaatcttgatgatgctgcatc 144
||||||||||||||||||||||||
Sbjct: 206 tgggaatcttgatgatgctgcatc 229
>RF00452;mir-172;ABIM01001078.1/716-916 3649:Carica papaya (papaya)
Length = 201
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 120 atgggaatcttgatgatgctgca 142
|||||||||||||||||||||||
Sbjct: 168 atgggaatcttgatgatgctgca 190
Score = 44.1 bits (22), Expect = 6e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 12 tgtttgcagatgcggcatcatcaagattcacaaa 45
||||||| |||| ||||||||||||||||||||
Sbjct: 2 tgtttgcggatggagcatcatcaagattcacaaa 35
>RF00452;mir-172;ABIM01012229.1/3274-3102 3649:Carica papaya
(papaya)
Length = 173
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 118 aaatgggaatcttgatgatgctgcatc 144
||||| |||||||||||||||||||||
Sbjct: 138 aaatgagaatcttgatgatgctgcatc 164
>RF00452;mir-172;AARH01004394.1/257332-257189 3694:Populus
trichocarpa
Length = 144
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 112 cctttcaaatgggaatcttgatgatgctgca 142
||||| || ||||||||||||||||||||||
Sbjct: 103 cctttgaattgggaatcttgatgatgctgca 133
>RF00452;mir-172;AC165172.2/39243-39397 4577:Zea mays
Length = 155
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 121 tgggaatcttgatgatgctgcat 143
|||||||||||||||||||||||
Sbjct: 123 tgggaatcttgatgatgctgcat 145
>RF00452;mir-172;EU974220.1/371-523 4577:Zea mays
Length = 153
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 121 tgggaatcttgatgatgctgcat 143
|||||||||||||||||||||||
Sbjct: 121 tgggaatcttgatgatgctgcat 143
>RF00452;mir-172;ABXC01002369.1/66790-66601 4558:Sorghum bicolor
(sorghum)
Length = 190
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 121 tgggaatcttgatgatgctgcat 143
|||||||||||||||||||||||
Sbjct: 158 tgggaatcttgatgatgctgcat 180
>RF00452;mir-172;EU869090.1/178-288 39946:Oryza sativa Indica Group
Length = 111
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 124 gaatcttgatgatgctgcatcagcaaa 150
||||||||||||||||||| |||||||
Sbjct: 82 gaatcttgatgatgctgcaccagcaaa 108
>RF00452;mir-172;AC189388.2/19492-19378 51351:Brassica rapa subsp.
pekinensis
Length = 115
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 124 gaatcttgatgatgctgcatca 145
||||||||||||||||||||||
Sbjct: 86 gaatcttgatgatgctgcatca 107
>RF00452;mir-172;FM163882.1/53-161 3702:Arabidopsis thaliana (thale
cress)
Length = 109
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 124 gaatcttgatgatgctgcatca 145
||||||||||||||||||||||
Sbjct: 80 gaatcttgatgatgctgcatca 101
>RF00452;mir-172;AY728437.1/1-132 3694:Populus trichocarpa
Length = 132
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 121 tgggaatcttgatgatgctgca 142
||||||||||||||||||||||
Sbjct: 106 tgggaatcttgatgatgctgca 127
>RF00452;mir-172;AARH01003915.1/155600-155740 3694:Populus
trichocarpa
Length = 141
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 124 gaatcttgatgatgctgcatcagcaa 149
||||||||||||||||||||| ||||
Sbjct: 112 gaatcttgatgatgctgcatcggcaa 137
>RF00452;mir-172;AC182714.2/88903-88742 3694:Populus trichocarpa
Length = 162
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 124 gaatcttgatgatgctgcatcagcaa 149
||||||||||||||||||||| ||||
Sbjct: 133 gaatcttgatgatgctgcatcggcaa 158
>RF00452;mir-172;CAAP02003282.1/14594-14705 29760:Vitis vinifera
Length = 112
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 124 gaatcttgatgatgctgcatcagcaa 149
||||||||||||||||||||| ||||
Sbjct: 83 gaatcttgatgatgctgcatcggcaa 108
>RF00452;mir-172;AM481129.2/11694-11833 29760:Vitis vinifera
Length = 140
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 121 tgggaatcttgatgatgctgca 142
||||||||||||||||||||||
Sbjct: 108 tgggaatcttgatgatgctgca 129
>RF00452;mir-172;AM457961.2/1662-1782 29760:Vitis vinifera
Length = 121
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 124 gaatcttgatgatgctgcatcagcaa 149
||||||||||||||||||||| ||||
Sbjct: 92 gaatcttgatgatgctgcatcggcaa 117
>RF00452;mir-172;CAAP02000586.1/29172-29291 29760:Vitis vinifera
Length = 120
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 124 gaatcttgatgatgctgcatcagcaa 149
||||||||||||||||||||| ||||
Sbjct: 91 gaatcttgatgatgctgcatcggcaa 116
>RF00452;mir-172;ABXC01000976.1/316269-316174 4558:Sorghum bicolor
(sorghum)
Length = 96
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 124 gaatcttgatgatgctgcatcagcaa 149
||||||||||||||||||| ||||||
Sbjct: 67 gaatcttgatgatgctgcaccagcaa 92
