miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00452;mir-172;CAAP02003282.1/14594-14705 29760:Vitis vinifera
Length = 112
Score = 52.0 bits (26), Expect = 2e-06
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 11 ttgtttgcaaatgtggcatcatcaagattcacatgcaa 48
|||||||| |||| |||||||||||||||||||||||
Sbjct: 1 ttgtttgcgcatgtagcatcatcaagattcacatgcaa 38
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 87 tgagaatcctgatgatgctgcattggcaat 116
|||||||| |||||||||||||| ||||||
Sbjct: 80 tgagaatcttgatgatgctgcatcggcaat 109
>RF00452;mir-172;AM457961.2/1662-1782 29760:Vitis vinifera
Length = 121
Score = 52.0 bits (26), Expect = 2e-06
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 11 ttgtttgcaaatgtggcatcatcaagattcacatgcaa 48
||||||||| ||| |||||||||||||||||||||||
Sbjct: 1 ttgtttgcaggtgtagcatcatcaagattcacatgcaa 38
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 87 tgagaatcctgatgatgctgcattggcaat 116
|||||||| |||||||||||||| ||||||
Sbjct: 89 tgagaatcttgatgatgctgcatcggcaat 118
>RF00452;mir-172;CAAP02000586.1/29172-29291 29760:Vitis vinifera
Length = 120
Score = 48.1 bits (24), Expect = 3e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 11 ttgtttgcaaatgtggcatcatcaagattcacatgc 46
||||||||| ||| |||||||||||||||||||||
Sbjct: 1 ttgtttgcaggtgtagcatcatcaagattcacatgc 36
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 87 tgagaatcctgatgatgctgcattggcaat 116
|||||||| |||||||||||||| ||||||
Sbjct: 88 tgagaatcttgatgatgctgcatcggcaat 117
>RF00452;mir-172;ABIM01030483.1/4658-4870 3649:Carica papaya
(papaya)
Length = 213
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 26 gcatcatcaagattcacatgcaa 48
|||||||||||||||||||||||
Sbjct: 16 gcatcatcaagattcacatgcaa 38
>RF00452;mir-172;FM163855.1/191-306 3702:Arabidopsis thaliana
(thale cress)
Length = 116
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 22 tgtggcatcatcaagattcacat 44
|||||||||||||||||||||||
Sbjct: 12 tgtggcatcatcaagattcacat 34
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 87 tgagaatcctgatgatgctgcattggcaat 116
|||||||| |||||||||||||| ||||||
Sbjct: 84 tgagaatcttgatgatgctgcatcggcaat 113
>RF00452;mir-172;AARH01003915.1/155600-155740 3694:Populus
trichocarpa
Length = 141
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 26 gcatcatcaagattcacatgcaa 48
|||||||||||||||||||||||
Sbjct: 16 gcatcatcaagattcacatgcaa 38
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 87 tgagaatcctgatgatgctgcattggcaat 116
|||||||| |||||||||||||| ||||||
Sbjct: 109 tgagaatcttgatgatgctgcatcggcaat 138
>RF00452;mir-172;AASG02011039.1/5310-5468 3988:Ricinus communis
(castor bean)
Length = 159
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 26 gcatcatcaagattcacatgcaa 48
|||||||||||||||||||||||
Sbjct: 16 gcatcatcaagattcacatgcaa 38
>RF00452;mir-172;BABK01027900.1/1116-1276 34305:Lotus japonicus
Length = 161
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 87 tgagaatcctgatgatgctgcattggc 113
|||||||| ||||||||||||||||||
Sbjct: 129 tgagaatcttgatgatgctgcattggc 155
Score = 44.1 bits (22), Expect = 5e-04
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 11 ttgtttgcaaatgtggcatcatcaagattcacatgcaa 48
|||||||| |||| ||| |||||||||||||||||||
Sbjct: 1 ttgtttgctgatgtagcaccatcaagattcacatgcaa 38
>RF00452;mir-172;AC182714.2/88903-88742 3694:Populus trichocarpa
Length = 162
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 87 tgagaatcctgatgatgctgcattggcaat 116
|||||||| |||||||||||||| ||||||
Sbjct: 130 tgagaatcttgatgatgctgcatcggcaat 159
>RF00452;mir-172;CR954190.2/85410-85533 3880:Medicago truncatula
(barrel medic)
Length = 124
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 87 tgagaatcctgatgatgctgca 108
||||||||||||||||||||||
Sbjct: 92 tgagaatcctgatgatgctgca 113
>RF00452;mir-172;ABXC01003290.1/30664-30525 4558:Sorghum bicolor
(sorghum)
Length = 140
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 87 tgagaatcctgatgatgctgca 108
||||||||||||||||||||||
Sbjct: 108 tgagaatcctgatgatgctgca 129
>RF00452;mir-172;AP006162.2/95640-95748 39947:Oryza sativa
Japonica Group
Length = 109
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 23 gtggcatcatcaagattcacat 44
||||||||||||||||||||||
Sbjct: 13 gtggcatcatcaagattcacat 34
