miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00689;MIR390;AC189543.2/98818-98914 51351:Brassica rapa subsp.
pekinensis
Length = 97
Score = 67.9 bits (34), Expect = 3e-11
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 11 agaatctgtaaagctcaggagggatagcgccatc 44
||||||||||||||||||||||||||||||||||
Sbjct: 5 agaatctgtaaagctcaggagggatagcgccatc 38
>RF00689;MIR390;ABIM01001395.1/10315-10183 3649:Carica papaya
(papaya)
Length = 133
Score = 65.9 bits (33), Expect = 1e-10
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 11 agaatctgtaaagctcaggagggatagcgccat 43
|||||||||||||||||||||||||||||||||
Sbjct: 5 agaatctgtaaagctcaggagggatagcgccat 37
Score = 60.0 bits (30), Expect = 7e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 77 tggcgctatctatcctgagtttcatgggttcttc 110
|||||||||||||||||||||||| |||||||||
Sbjct: 98 tggcgctatctatcctgagtttcacgggttcttc 131
>RF00689;MIR390;FM163955.1/147-245 3702:Arabidopsis thaliana
(thale cress)
Length = 99
Score = 65.9 bits (33), Expect = 1e-10
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 11 agaatctgtaaagctcaggagggatagcgccat 43
|||||||||||||||||||||||||||||||||
Sbjct: 5 agaatctgtaaagctcaggagggatagcgccat 37
Score = 44.1 bits (22), Expect = 4e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 77 tggcgctatctatcctgagtttcatgggttcttc 110
|||||||||| |||||||||||||| || |||||
Sbjct: 64 tggcgctatccatcctgagtttcattggctcttc 97
>RF00689;MIR390;AC235430.1/64014-64117 3847:Glycine max (soybean)
Length = 104
Score = 65.9 bits (33), Expect = 1e-10
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 11 agaatctgtaaagctcaggagggatagcgccat 43
|||||||||||||||||||||||||||||||||
Sbjct: 5 agaatctgtaaagctcaggagggatagcgccat 37
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 79 gcgctatctatcctgagtttcatgggttct 108
|||||||| |||||||||||||||| ||||
Sbjct: 71 gcgctatccatcctgagtttcatggcttct 100
>RF00689;MIR390;CAAP02001430.1/46926-46781 29760:Vitis vinifera
Length = 146
Score = 65.9 bits (33), Expect = 1e-10
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 7 tgggagaatctgtaaagctcaggagggatagcgccat 43
||||||||||||| |||||||||||||||||||||||
Sbjct: 1 tgggagaatctgttaagctcaggagggatagcgccat 37
Score = 60.0 bits (30), Expect = 7e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 77 tggcgctatctatcctgagtttcatgggttcttc 110
|||||||||||||||||||||||| |||||||||
Sbjct: 111 tggcgctatctatcctgagtttcacgggttcttc 144
>RF00689;MIR390;AARH01000472.1/96655-96783 3694:Populus
trichocarpa
Length = 129
Score = 63.9 bits (32), Expect = 4e-10
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 8 gggagaatctgtaaagctcaggagggatagcgccat 43
|||||||||||| |||||||||||||||||||||||
Sbjct: 2 gggagaatctgttaagctcaggagggatagcgccat 37
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 77 tggcgctatctatcctgagtttcatgggttct 108
||||||||||||||||||||| |||||||||
Sbjct: 94 tggcgctatctatcctgagttctatgggttct 125
>RF00689;MIR390;AM442301.1/4341-4465 29760:Vitis vinifera
Length = 125
Score = 63.9 bits (32), Expect = 4e-10
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 7 tgggagaatctgtaaagctcaggagggatagcgcca 42
||||||||||||| ||||||||||||||||||||||
Sbjct: 1 tgggagaatctgttaagctcaggagggatagcgcca 36
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 79 gcgctatctatcctgagtttcatgggttcttc 110
|||||||| |||||||||||||| ||||||||
Sbjct: 92 gcgctatccatcctgagtttcattggttcttc 123
>RF00689;MIR390;ABIM01002245.1/567-665 3649:Carica papaya (papaya)
Length = 99
Score = 58.0 bits (29), Expect = 3e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 11 agaatctgtaaagctcaggagggatagcgccat 43
||||||||| |||||||||||||||||||||||
Sbjct: 5 agaatctgttaagctcaggagggatagcgccat 37
>RF00689;MIR390;AARH01003823.1/151507-151375 3694:Populus
trichocarpa
Length = 133
Score = 58.0 bits (29), Expect = 3e-08
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 7 tgggagaatctgtaaagctcaggagggatagcgccat 43
|||||| |||||| |||||||||||||||||||||||
Sbjct: 1 tgggaggatctgttaagctcaggagggatagcgccat 37
>RF00689;MIR390;AC143338.29/35527-35410 3880:Medicago truncatula
(barrel medic)
Length = 118
Score = 58.0 bits (29), Expect = 3e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 11 agaatctgtaaagctcaggagggatagcgccat 43
||||||||| |||||||||||||||||||||||
Sbjct: 5 agaatctgttaagctcaggagggatagcgccat 37
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 79 gcgctatctatcctgagtttcatgggttcttc 110
|||||||| |||||||||||||||| ||||||
Sbjct: 85 gcgctatccatcctgagtttcatggcttcttc 116
>RF00689;MIR390;AC189355.2/75830-75939 51351:Brassica rapa subsp.
pekinensis
Length = 110
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 16 ctgtaaagctcaggagggatagcgccat 43
||||||||||||||||||||||||||||
Sbjct: 10 ctgtaaagctcaggagggatagcgccat 37
>RF00689;MIR390;AARH01006918.1/30613-30728 3694:Populus
trichocarpa
Length = 116
Score = 54.0 bits (27), Expect = 4e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 11 agaatctgtaaagctcaggagggatagcgcc 41
||||||||| |||||||||||||||||||||
Sbjct: 5 agaatctgttaagctcaggagggatagcgcc 35
>RF00689;MIR390;AB025632.1/22985-23104 3702:Arabidopsis thaliana
(thale cress)
Length = 120
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 19 taaagctcaggagggatagcgccat 43
|||||||||||||||||||||||||
Sbjct: 13 taaagctcaggagggatagcgccat 37
>RF00689;MIR390;AASG02000259.1/53979-54102 3988:Ricinus communis
(castor bean)
Length = 124
Score = 50.1 bits (25), Expect = 7e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 9 ggagaatctgtaaagctcaggagggatagcgcc 41
||||| ||||| |||||||||||||||||||||
Sbjct: 3 ggagactctgttaagctcaggagggatagcgcc 35
Score = 44.1 bits (22), Expect = 4e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 77 tggcgctatctatcctgagtttcatgggttcttc 110
|||||||||| ||||||||||||| ||||||||
Sbjct: 89 tggcgctatccatcctgagtttcacaggttcttc 122
>RF00689;MIR390;AASG02008232.1/8506-8369 3988:Ricinus communis
(castor bean)
Length = 138
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 79 gcgctatctatcctgagtttcatgggttcttc 110
|||||||| |||||||||||||| ||||||||
Sbjct: 105 gcgctatccatcctgagtttcattggttcttc 136
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 21 aagctcaggagggatagcgccat 43
|||||||||||||||||||||||
Sbjct: 15 aagctcaggagggatagcgccat 37
