miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48969_osa-miR399f:pmrd
Length = 117
Score = 54.0 bits (27), Expect = 3e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 91 ttgtgctctctgccaatggagatttgcccagcaat 125
|||| ||||||||||| ||||||||||||||||||
Sbjct: 77 ttgttctctctgccaaaggagatttgcccagcaat 111
>54881_vvi-miR399e:pmrd
Length = 112
Score = 48.1 bits (24), Expect = 2e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 92 tgtgctctctgccaatggagatttgcccagcaattc 127
||||| ||||||||| |||||||||||| |||||||
Sbjct: 73 tgtgccctctgccaaaggagatttgcccggcaattc 108
>54494_sbi-miR399f:pmrd
Length = 120
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 98 ctctgccaatggagatttgcccagcaat 125
||||||||| ||||||||||||||||||
Sbjct: 78 ctctgccaaaggagatttgcccagcaat 105
>47535_ath-miRf10435-akr:pmrd
Length = 92
Score = 46.1 bits (23), Expect = 7e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 97 tctctgccaatggagatttgcccagcaattc 127
|||||||||| |||||||||||| |||||||
Sbjct: 62 tctctgccaaaggagatttgccccgcaattc 92
>47018_ath-miR399d:pmrd
Length = 100
Score = 46.1 bits (23), Expect = 7e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 97 tctctgccaatggagatttgcccagcaattc 127
|||||||||| |||||||||||| |||||||
Sbjct: 66 tctctgccaaaggagatttgccccgcaattc 96
>54493_sbi-miR399e:pmrd
Length = 126
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 100 ctgccaatggagatttgcccagcaat 125
||||||| ||||||||||||||||||
Sbjct: 86 ctgccaaaggagatttgcccagcaat 111
>49373_osa-miRf10158-akr:pmrd
Length = 112
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 100 ctgccaatggagatttgcccagcaat 125
||||||| ||||||||||||||||||
Sbjct: 84 ctgccaaaggagatttgcccagcaat 109
>48968_osa-miR399e:pmrd
Length = 118
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 100 ctgccaatggagatttgcccagcaat 125
||||||| ||||||||||||||||||
Sbjct: 87 ctgccaaaggagatttgcccagcaat 112
>48750_mtr-miR399a:pmrd
Length = 134
Score = 44.1 bits (22), Expect = 3e-05
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 99 tctgccaatggagatttgcccagcaattccactgcaac 136
|||||||| ||||||||||||||| |||| |||||||
Sbjct: 93 tctgccaaaggagatttgcccagcgattctcctgcaac 130
>51749_ptc-miR399c:pmrd
Length = 126
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 8 tgcagttgcattacagggcaa 28
|||||||||||||||||||||
Sbjct: 3 tgcagttgcattacagggcaa 23
>51748_ptc-miR399b:pmrd
Length = 126
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 8 tgcagttgcattacagggcaa 28
|||||||||||||||||||||
Sbjct: 3 tgcagttgcattacagggcaa 23
>51747_ptc-miR399a:pmrd
Length = 120
Score = 42.1 bits (21), Expect = 1e-04
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 95 gctctctgccaatggagatttgcccagcaattc 127
|||| ||||||| |||||||||||| |||||||
Sbjct: 85 gctcgctgccaaaggagatttgccccgcaattc 117
>48970_osa-miR399g:pmrd
Length = 119
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 99 tctgccaatggagatttgcccagcaattc 127
|||||||| ||||||||||||||| ||||
Sbjct: 87 tctgccaaaggagatttgcccagcgattc 115
>48754_mtr-miR399e:pmrd
Length = 134
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 99 tctgccaatggagatttgcccagcaattc 127
|||||||| ||||||||||||||| ||||
Sbjct: 93 tctgccaaaggagatttgcccagcgattc 121
>47020_ath-miR399f:pmrd
Length = 118
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 95 gctctctgccaatggagatttgccc 119
|||||||||||| ||||||||||||
Sbjct: 82 gctctctgccaaaggagatttgccc 106
>54883_vvi-miR399g:pmrd
Length = 113
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 100 ctgccaatggagatttgcccagcaattc 127
|||||||||||| ||||||||||||||
Sbjct: 30 ctgccaatggagtattgcccagcaattc 3
>53709_ptc-miRf11887-akr:pmrd
Length = 99
Score = 40.1 bits (20), Expect = 4e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 101 tgccaatggagatttgcccagcaattccactg 132
|||||| |||||||||| || |||||||||||
Sbjct: 68 tgccaaaggagatttgctcaccaattccactg 99
