miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54883_vvi-miR399g:pmrd
Length = 113
Score = 69.9 bits (35), Expect = 4e-13
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 68 taagctcactgccaaaggagatttgccccgcaattcagc 106
||||||||||||||||||||||||||||| |||||||||
Sbjct: 74 taagctcactgccaaaggagatttgcccctcaattcagc 112
>51747_ptc-miR399a:pmrd
Length = 120
Score = 65.9 bits (33), Expect = 6e-12
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 68 taagctcactgccaaaggagatttgccccgcaattca 104
||||||| |||||||||||||||||||||||||||||
Sbjct: 82 taagctcgctgccaaaggagatttgccccgcaattca 118
>51751_ptc-miR399e:pmrd
Length = 114
Score = 60.0 bits (30), Expect = 4e-10
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 71 gctcactgccaaaggagatttgccccgcaattca 104
|||||||||||||| |||||||||||||||||||
Sbjct: 79 gctcactgccaaagaagatttgccccgcaattca 112
>51750_ptc-miR399d:pmrd
Length = 114
Score = 58.0 bits (29), Expect = 2e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 71 gctcactgccaaaggagatttgccccgcaattc 103
|||||||||||||| ||||||||||||||||||
Sbjct: 79 gctcactgccaaagaagatttgccccgcaattc 111
>47018_ath-miR399d:pmrd
Length = 100
Score = 58.0 bits (29), Expect = 2e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 76 ctgccaaaggagatttgccccgcaattca 104
|||||||||||||||||||||||||||||
Sbjct: 69 ctgccaaaggagatttgccccgcaattca 97
>47535_ath-miRf10435-akr:pmrd
Length = 92
Score = 56.0 bits (28), Expect = 6e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 76 ctgccaaaggagatttgccccgcaattc 103
||||||||||||||||||||||||||||
Sbjct: 65 ctgccaaaggagatttgccccgcaattc 92
>54881_vvi-miR399e:pmrd
Length = 112
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 76 ctgccaaaggagatttgccccgcaattc 103
|||||||||||||||||||| |||||||
Sbjct: 81 ctgccaaaggagatttgcccggcaattc 108
>54493_sbi-miR399e:pmrd
Length = 126
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 74 cactgccaaaggagatttgccccgcaat 101
|||||||||||||||||||||| |||||
Sbjct: 84 cactgccaaaggagatttgcccagcaat 111
>51749_ptc-miR399c:pmrd
Length = 126
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 77 tgccaaaggagatttgccccgcaattc 103
||||||||||||||||||| |||||||
Sbjct: 97 tgccaaaggagatttgcccggcaattc 123
>51748_ptc-miR399b:pmrd
Length = 126
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 77 tgccaaaggagatttgccccgcaattc 103
||||||||||||||||||| |||||||
Sbjct: 97 tgccaaaggagatttgcccggcaattc 123
>47015_ath-miR399a:pmrd
Length = 123
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 17 attacagggcaaatctcctttgg 39
|||||||||||||||||||||||
Sbjct: 117 attacagggcaaatctcctttgg 95
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 76 ctgccaaaggagatttgccc 95
||||||||||||||||||||
Sbjct: 92 ctgccaaaggagatttgccc 111
>54495_sbi-miR399g:pmrd
Length = 125
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 75 actgccaaaggagatttgccccgcaattca 104
|||||||||||| |||||||||| ||||||
Sbjct: 84 actgccaaaggaaatttgccccggaattca 113
>54494_sbi-miR399f:pmrd
Length = 120
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 76 ctgccaaaggagatttgccccgcaat 101
|||||||||||||||||||| |||||
Sbjct: 80 ctgccaaaggagatttgcccagcaat 105
>49373_osa-miRf10158-akr:pmrd
Length = 112
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 76 ctgccaaaggagatttgccccgcaat 101
|||||||||||||||||||| |||||
Sbjct: 84 ctgccaaaggagatttgcccagcaat 109
>48974_osa-miR399k:pmrd
Length = 106
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 75 actgccaaaggagatttgccccgcaattca 104
|||||||||||| |||||||||| ||||||
Sbjct: 74 actgccaaaggaaatttgccccggaattca 103
>48969_osa-miR399f:pmrd
Length = 117
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 76 ctgccaaaggagatttgccccgcaat 101
|||||||||||||||||||| |||||
Sbjct: 86 ctgccaaaggagatttgcccagcaat 111
>48968_osa-miR399e:pmrd
Length = 118
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 76 ctgccaaaggagatttgccccgcaat 101
|||||||||||||||||||| |||||
Sbjct: 87 ctgccaaaggagatttgcccagcaat 112
>48755_mtr-miR399f:pmrd
Length = 81
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 72 ctcactgccaaaggagatttgccccg 97
||||||||||||| ||||||||||||
Sbjct: 56 ctcactgccaaagaagatttgccccg 81
>47020_ath-miR399f:pmrd
Length = 118
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 70 agctcactgccaaaggagatttgccc 95
||||| ||||||||||||||||||||
Sbjct: 81 agctctctgccaaaggagatttgccc 106
>47019_ath-miR399e:pmrd
Length = 109
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 76 ctgccaaaggagatttgccccgcaat 101
||||||||||||||||||| ||||||
Sbjct: 78 ctgccaaaggagatttgcctcgcaat 103
>55096_zma-miR399f:pmrd
Length = 105
Score = 42.1 bits (21), Expect = 9e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 76 ctgccaaaggagatttgccccgcaattca 104
||||||||||| |||||||||| ||||||
Sbjct: 65 ctgccaaaggaaatttgccccggaattca 93
>52630_ptc-miRf10808-akr:pmrd
Length = 110
Score = 42.1 bits (21), Expect = 9e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 77 tgccaaaggagatttgccccgcaat 101
||||||||||||||||||| |||||
Sbjct: 25 tgccaaaggagatttgcccggcaat 1
>51890_ptc-miRf10068-akr:pmrd
Length = 110
Score = 42.1 bits (21), Expect = 9e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 77 tgccaaaggagatttgccccgcaat 101
||||||||||||||||||| |||||
Sbjct: 25 tgccaaaggagatttgcccggcaat 1
>48970_osa-miR399g:pmrd
Length = 119
Score = 42.1 bits (21), Expect = 9e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 76 ctgccaaaggagatttgccccgcaattca 104
|||||||||||||||||||| || |||||
Sbjct: 88 ctgccaaaggagatttgcccagcgattca 116
>48971_osa-miR399h:pmrd
Length = 99
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 74 cactgccaaaggagatttgccccgcaat 101
||||||||||||||| |||||| |||||
Sbjct: 66 cactgccaaaggagacttgcccagcaat 93
>48754_mtr-miR399e:pmrd
Length = 134
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 76 ctgccaaaggagatttgccc 95
||||||||||||||||||||
Sbjct: 94 ctgccaaaggagatttgccc 113
>48750_mtr-miR399a:pmrd
Length = 134
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 76 ctgccaaaggagatttgccc 95
||||||||||||||||||||
Sbjct: 94 ctgccaaaggagatttgccc 113
>48377_bna-miR399:pmrd
Length = 102
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 76 ctgccaaaggagatttgccc 95
||||||||||||||||||||
Sbjct: 80 ctgccaaaggagatttgccc 99
