miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>54900_vvi-miR535e:pmrd
          Length = 101

 Score = 67.9 bits (34), Expect = 2e-12
 Identities = 71/82 (86%), Gaps = 1/82 (1%)
 Strand = Plus / Minus

                                                                      
Query: 19 tatgacaacgatagagagcacgcttgtacacatccatgt-ccttgcaagaatgccaacga 77
          ||||||| ||| ||||||||||| ||||||||  ||||| ||| ||| ||||||  || |
Sbjct: 91 tatgacagcgacagagagcacgcctgtacacagtcatgttcctcgcatgaatgcagacta 32

                                
Query: 78 gcgtgctctctctcgttgtcaa 99
          ||||||||||||||||||||||
Sbjct: 31 gcgtgctctctctcgttgtcaa 10




>54899_vvi-miR535d:pmrd
          Length = 101

 Score = 67.9 bits (34), Expect = 2e-12
 Identities = 71/82 (86%), Gaps = 1/82 (1%)
 Strand = Plus / Minus

                                                                      
Query: 19 tatgacaacgatagagagcacgcttgtacacatccatgt-ccttgcaagaatgccaacga 77
          ||||||| ||| ||||||||||| ||||||||  ||||| ||| ||| ||||||  || |
Sbjct: 91 tatgacagcgacagagagcacgcctgtacacagtcatgttcctcgcatgaatgcagacta 32

                                
Query: 78 gcgtgctctctctcgttgtcaa 99
          ||||||||||||||||||||||
Sbjct: 31 gcgtgctctctctcgttgtcaa 10




>54898_vvi-miR535c:pmrd
          Length = 101

 Score = 67.9 bits (34), Expect = 2e-12
 Identities = 71/82 (86%), Gaps = 1/82 (1%)
 Strand = Plus / Minus

                                                                      
Query: 19 tatgacaacgatagagagcacgcttgtacacatccatgt-ccttgcaagaatgccaacga 77
          ||||||| ||| ||||||||||| ||||||||  ||||| ||| ||| ||||||  || |
Sbjct: 91 tatgacagcgagagagagcacgcctgtacacagtcatgttcctcgcatgaatgctgacta 32

                                
Query: 78 gcgtgctctctctcgttgtcaa 99
          ||||||||||||||||||||||
Sbjct: 31 gcgtgctctctctcgttgtcaa 10




>54897_vvi-miR535b:pmrd
          Length = 101

 Score = 67.9 bits (34), Expect = 2e-12
 Identities = 71/82 (86%), Gaps = 1/82 (1%)
 Strand = Plus / Minus

                                                                      
Query: 19 tatgacaacgatagagagcacgcttgtacacatccatgt-ccttgcaagaatgccaacga 77
          ||||||| ||| ||||||||||| ||||||||  ||||| ||| ||| ||||||  || |
Sbjct: 91 tatgacagcgagagagagcacgcctgtacacagtcatgttcctcgcatgaatgctgacta 32

                                
Query: 78 gcgtgctctctctcgttgtcaa 99
          ||||||||||||||||||||||
Sbjct: 31 gcgtgctctctctcgttgtcaa 10




>54896_vvi-miR535a:pmrd
          Length = 101

 Score = 67.9 bits (34), Expect = 2e-12
 Identities = 71/82 (86%), Gaps = 1/82 (1%)
 Strand = Plus / Minus

                                                                      
Query: 19 tatgacaacgatagagagcacgcttgtacacatccatgt-ccttgcaagaatgccaacga 77
          ||||||| ||| ||||||||||| ||||||||  ||||| ||| ||| ||||||  || |
Sbjct: 91 tatgacagcgagagagagcacgcctgtacacagtcatgttcctcgcatgaatgctgacta 32

                                
Query: 78 gcgtgctctctctcgttgtcaa 99
          ||||||||||||||||||||||
Sbjct: 31 gcgtgctctctctcgttgtcaa 10




>54390_rco-miR535:pmrd
          Length = 91

 Score = 56.0 bits (28), Expect = 6e-09
 Identities = 68/80 (85%), Gaps = 1/80 (1%)
 Strand = Plus / Minus

                                                                      
Query: 21 tgacaacgatagagagcacgcttgtacacatccatgt-ccttgcaagaatgccaacgagc 79
          |||||||||||| ||||||||| ||   || |||||| |||| || ||| || ||| |||
Sbjct: 89 tgacaacgatagggagcacgctggtgtgcaaccatgttccttacatgaaggctaacaagc 30

                              
Query: 80 gtgctctctctcgttgtcaa 99
          ||||||||||||||||||||
Sbjct: 29 gtgctctctctcgttgtcaa 10



 Score = 42.1 bits (21), Expect = 9e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 21 tgacaacgatagagagcacgcttgt 45
          ||||||||| |||||||||||||||
Sbjct: 11 tgacaacgagagagagcacgcttgt 35




>51422_ppt-miR535c:pmrd
          Length = 81

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                
Query: 77 agcgtgctctctctcgttgtca 98
          ||||||||||||||||||||||
Sbjct: 23 agcgtgctctctctcgttgtca 2




>51421_ppt-miR535b:pmrd
          Length = 81

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                
Query: 77 agcgtgctctctctcgttgtca 98
          ||||||||||||||||||||||
Sbjct: 23 agcgtgctctctctcgttgtca 2




>51420_ppt-miR535a:pmrd
          Length = 135

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                
Query: 77 agcgtgctctctctcgttgtca 98
          ||||||||||||||||||||||
Sbjct: 48 agcgtgctctctctcgttgtca 27




>46905_aqc-miR535:pmrd
          Length = 87

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                
Query: 61 tgcaagaatgccaacgagcgtgctctctctcgttgtca 98
          |||| ||||||| ||  |||||||||||||||||||||
Sbjct: 38 tgcatgaatgccgactcgcgtgctctctctcgttgtca 1




>51423_ppt-miR535d:pmrd
          Length = 85

 Score = 42.1 bits (21), Expect = 9e-05
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                               
Query: 78 gcgtgctctctctcgttgtca 98
          |||||||||||||||||||||
Sbjct: 23 gcgtgctctctctcgttgtca 3




>49023_osa-miR535:pmrd
          Length = 94

 Score = 42.1 bits (21), Expect = 9e-05
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                               
Query: 78 gcgtgctctctctcgttgtca 98
          |||||||||||||||||||||
Sbjct: 26 gcgtgctctctctcgttgtca 6