miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54900_vvi-miR535e:pmrd
Length = 101
Score = 67.9 bits (34), Expect = 2e-12
Identities = 71/82 (86%), Gaps = 1/82 (1%)
Strand = Plus / Minus
Query: 19 tatgacaacgatagagagcacgcttgtacacatccatgt-ccttgcaagaatgccaacga 77
||||||| ||| ||||||||||| |||||||| ||||| ||| ||| |||||| || |
Sbjct: 91 tatgacagcgacagagagcacgcctgtacacagtcatgttcctcgcatgaatgcagacta 32
Query: 78 gcgtgctctctctcgttgtcaa 99
||||||||||||||||||||||
Sbjct: 31 gcgtgctctctctcgttgtcaa 10
>54899_vvi-miR535d:pmrd
Length = 101
Score = 67.9 bits (34), Expect = 2e-12
Identities = 71/82 (86%), Gaps = 1/82 (1%)
Strand = Plus / Minus
Query: 19 tatgacaacgatagagagcacgcttgtacacatccatgt-ccttgcaagaatgccaacga 77
||||||| ||| ||||||||||| |||||||| ||||| ||| ||| |||||| || |
Sbjct: 91 tatgacagcgacagagagcacgcctgtacacagtcatgttcctcgcatgaatgcagacta 32
Query: 78 gcgtgctctctctcgttgtcaa 99
||||||||||||||||||||||
Sbjct: 31 gcgtgctctctctcgttgtcaa 10
>54898_vvi-miR535c:pmrd
Length = 101
Score = 67.9 bits (34), Expect = 2e-12
Identities = 71/82 (86%), Gaps = 1/82 (1%)
Strand = Plus / Minus
Query: 19 tatgacaacgatagagagcacgcttgtacacatccatgt-ccttgcaagaatgccaacga 77
||||||| ||| ||||||||||| |||||||| ||||| ||| ||| |||||| || |
Sbjct: 91 tatgacagcgagagagagcacgcctgtacacagtcatgttcctcgcatgaatgctgacta 32
Query: 78 gcgtgctctctctcgttgtcaa 99
||||||||||||||||||||||
Sbjct: 31 gcgtgctctctctcgttgtcaa 10
>54897_vvi-miR535b:pmrd
Length = 101
Score = 67.9 bits (34), Expect = 2e-12
Identities = 71/82 (86%), Gaps = 1/82 (1%)
Strand = Plus / Minus
Query: 19 tatgacaacgatagagagcacgcttgtacacatccatgt-ccttgcaagaatgccaacga 77
||||||| ||| ||||||||||| |||||||| ||||| ||| ||| |||||| || |
Sbjct: 91 tatgacagcgagagagagcacgcctgtacacagtcatgttcctcgcatgaatgctgacta 32
Query: 78 gcgtgctctctctcgttgtcaa 99
||||||||||||||||||||||
Sbjct: 31 gcgtgctctctctcgttgtcaa 10
>54896_vvi-miR535a:pmrd
Length = 101
Score = 67.9 bits (34), Expect = 2e-12
Identities = 71/82 (86%), Gaps = 1/82 (1%)
Strand = Plus / Minus
Query: 19 tatgacaacgatagagagcacgcttgtacacatccatgt-ccttgcaagaatgccaacga 77
||||||| ||| ||||||||||| |||||||| ||||| ||| ||| |||||| || |
Sbjct: 91 tatgacagcgagagagagcacgcctgtacacagtcatgttcctcgcatgaatgctgacta 32
Query: 78 gcgtgctctctctcgttgtcaa 99
||||||||||||||||||||||
Sbjct: 31 gcgtgctctctctcgttgtcaa 10
>54390_rco-miR535:pmrd
Length = 91
Score = 56.0 bits (28), Expect = 6e-09
Identities = 68/80 (85%), Gaps = 1/80 (1%)
Strand = Plus / Minus
Query: 21 tgacaacgatagagagcacgcttgtacacatccatgt-ccttgcaagaatgccaacgagc 79
|||||||||||| ||||||||| || || |||||| |||| || ||| || ||| |||
Sbjct: 89 tgacaacgatagggagcacgctggtgtgcaaccatgttccttacatgaaggctaacaagc 30
Query: 80 gtgctctctctcgttgtcaa 99
||||||||||||||||||||
Sbjct: 29 gtgctctctctcgttgtcaa 10
Score = 42.1 bits (21), Expect = 9e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 21 tgacaacgatagagagcacgcttgt 45
||||||||| |||||||||||||||
Sbjct: 11 tgacaacgagagagagcacgcttgt 35
>51422_ppt-miR535c:pmrd
Length = 81
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 77 agcgtgctctctctcgttgtca 98
||||||||||||||||||||||
Sbjct: 23 agcgtgctctctctcgttgtca 2
>51421_ppt-miR535b:pmrd
Length = 81
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 77 agcgtgctctctctcgttgtca 98
||||||||||||||||||||||
Sbjct: 23 agcgtgctctctctcgttgtca 2
>51420_ppt-miR535a:pmrd
Length = 135
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 77 agcgtgctctctctcgttgtca 98
||||||||||||||||||||||
Sbjct: 48 agcgtgctctctctcgttgtca 27
>46905_aqc-miR535:pmrd
Length = 87
Score = 44.1 bits (22), Expect = 2e-05
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 61 tgcaagaatgccaacgagcgtgctctctctcgttgtca 98
|||| ||||||| || |||||||||||||||||||||
Sbjct: 38 tgcatgaatgccgactcgcgtgctctctctcgttgtca 1
>51423_ppt-miR535d:pmrd
Length = 85
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 78 gcgtgctctctctcgttgtca 98
|||||||||||||||||||||
Sbjct: 23 gcgtgctctctctcgttgtca 3
>49023_osa-miR535:pmrd
Length = 94
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 78 gcgtgctctctctcgttgtca 98
|||||||||||||||||||||
Sbjct: 26 gcgtgctctctctcgttgtca 6