miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>46897_aqc-miR477e:pmrd
Length = 84
Score = 167 bits (84), Expect = 2e-42
Identities = 84/84 (100%)
Strand = Plus / Plus
Query: 1 ttgatcactctccctcaagggcttctattagtcatgtagagaattcttatgtaactagaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttgatcactctccctcaagggcttctattagtcatgtagagaattcttatgtaactagaa 60
Query: 61 gaacttgagggagaatgaacaaac 84
||||||||||||||||||||||||
Sbjct: 61 gaacttgagggagaatgaacaaac 84
>46899_aqc-miR477g:pmrd
Length = 76
Score = 119 bits (60), Expect = 3e-28
Identities = 69/72 (95%)
Strand = Plus / Minus
Query: 3 gatcactctccctcaagggcttctattagtcatgtagagaattcttatgtaactagaaga 62
||||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||
Sbjct: 76 gatcactctccctcaagggcttctaatggtcatatagagaattcttatgtaactagaaga 17
Query: 63 acttgagggaga 74
||||||||||||
Sbjct: 16 acttgagggaga 5
>46895_aqc-miR477c:pmrd
Length = 76
Score = 119 bits (60), Expect = 3e-28
Identities = 69/72 (95%)
Strand = Plus / Minus
Query: 3 gatcactctccctcaagggcttctattagtcatgtagagaattcttatgtaactagaaga 62
||||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||
Sbjct: 76 gatcactctccctcaagggcttctaatggtcatatagagaattcttatgtaactagaaga 17
Query: 63 acttgagggaga 74
||||||||||||
Sbjct: 16 acttgagggaga 5
>46894_aqc-miR477b:pmrd
Length = 72
Score = 50.1 bits (25), Expect = 2e-07
Identities = 52/61 (85%)
Strand = Plus / Plus
Query: 7 actctccctcaagggcttctattagtcatgtagagaattcttatgtaactagaagaactt 66
||||||||||||||||||||| |||||| |||| ||| | |||||| |||||| ||||
Sbjct: 1 actctccctcaagggcttctaacagtcatttagaaaatgcagatgtaattagaagcactt 60
Query: 67 g 67
|
Sbjct: 61 g 61
>46893_aqc-miR477a:pmrd
Length = 73
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 8 ctctccctcaagggcttcta 27
||||||||||||||||||||
Sbjct: 1 ctctccctcaagggcttcta 20
>46898_aqc-miR477f:pmrd
Length = 80
Score = 38.2 bits (19), Expect = 0.001
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 1 ttgatcactctccctcaagggcttcta 27
||||||||||||| |||| ||||||||
Sbjct: 1 ttgatcactctccttcaaaggcttcta 27
