miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>51598_ptc-miR156h:pmrd
Length = 103
Score = 204 bits (103), Expect = 9e-54
Identities = 103/103 (100%)
Strand = Plus / Plus
Query: 1 ggtgatgctgttgacagaagatagagagcactgacgatgaaatgcatggagcttaattgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggtgatgctgttgacagaagatagagagcactgacgatgaaatgcatggagcttaattgc 60
Query: 61 atctcactcctttgtgctctctagtcttctgtcatcaccttca 103
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 atctcactcctttgtgctctctagtcttctgtcatcaccttca 103
>51597_ptc-miR156g:pmrd
Length = 103
Score = 180 bits (91), Expect = 1e-46
Identities = 100/103 (97%)
Strand = Plus / Plus
Query: 1 ggtgatgctgttgacagaagatagagagcactgacgatgaaatgcatggagcttaattgc 60
||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct: 1 ggtgatgttgttgacagaagatagagagcacagatgatgaaatgcatggagcttaattgc 60
Query: 61 atctcactcctttgtgctctctagtcttctgtcatcaccttca 103
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 atctcactcctttgtgctctctagtcttctgtcatcaccttca 103
>52807_ptc-miRf10985-akr:pmrd
Length = 87
Score = 172 bits (87), Expect = 3e-44
Identities = 87/87 (100%)
Strand = Plus / Plus
Query: 10 gttgacagaagatagagagcactgacgatgaaatgcatggagcttaattgcatctcactc 69
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gttgacagaagatagagagcactgacgatgaaatgcatggagcttaattgcatctcactc 60
Query: 70 ctttgtgctctctagtcttctgtcatc 96
|||||||||||||||||||||||||||
Sbjct: 61 ctttgtgctctctagtcttctgtcatc 87
>48532_gma-miR156e:pmrd
Length = 124
Score = 137 bits (69), Expect = 2e-33
Identities = 90/97 (92%)
Strand = Plus / Plus
Query: 1 ggtgatgctgttgacagaagatagagagcactgacgatgaaatgcatggagcttaattgc 60
|||||||||||||||||||||||||||||||||| ||||||||||||| | ||| ||
Sbjct: 11 ggtgatgctgttgacagaagatagagagcactgatgatgaaatgcatgaaagggaatggc 70
Query: 61 atctcactcctttgtgctctctagtcttctgtcatca 97
|||||||||||||||||||||||||||||||||||||
Sbjct: 71 atctcactcctttgtgctctctagtcttctgtcatca 107
>48537_gma-miR157c:pmrd
Length = 84
Score = 111 bits (56), Expect = 1e-25
Identities = 77/84 (91%)
Strand = Plus / Minus
Query: 11 ttgacagaagatagagagcactgacgatgaaatgcatggagcttaattgcatctcactcc 70
|||||||||||||||||||||||| ||||||||||||| | ||| ||||||||||||
Sbjct: 84 ttgacagaagatagagagcactgatgatgaaatgcatgaaagggaatggcatctcactcc 25
Query: 71 tttgtgctctctagtcttctgtca 94
||||||||||||||||||||||||
Sbjct: 24 tttgtgctctctagtcttctgtca 1
>54772_vvi-miR156g:pmrd
Length = 103
Score = 109 bits (55), Expect = 4e-25
Identities = 89/100 (89%), Gaps = 4/100 (4%)
Strand = Plus / Plus
Query: 1 ggtgatgctgttgacagaagatagagagcactgacgatgaaatgcatggagcttaattgc 60
||||||| ||||||||||||||||||||||| || ||||| ||||||||| ||||
Sbjct: 1 ggtgatgttgttgacagaagatagagagcacagatgatgatgtgcatggag----tttgc 56
Query: 61 atctcactcctttgtgctctctagtcttctgtcatcacct 100
|||||||||||||||||||||||| |||||||||||||||
Sbjct: 57 atctcactcctttgtgctctctagacttctgtcatcacct 96
>48697_mtr-miR156h:pmrd
Length = 94
Score = 107 bits (54), Expect = 2e-24
Identities = 84/94 (89%)
Strand = Plus / Plus
Query: 6 tgctgttgacagaagatagagagcactgacgatgaaatgcatggagcttaattgcatctc 65
|||||||||||||||||||||||||| || ||||||||||||||| ||| |||||||
Sbjct: 1 tgctgttgacagaagatagagagcacagatgatgaaatgcatggaaggcaatggcatctc 60
Query: 66 actcctttgtgctctctagtcttctgtcatcacc 99
| ||||||||||||| || |||||||||||||||
Sbjct: 61 attcctttgtgctctttattcttctgtcatcacc 94
>54774_vvi-miR156i:pmrd
Length = 103
Score = 103 bits (52), Expect = 2e-23
Identities = 83/93 (89%), Gaps = 4/93 (4%)
Strand = Plus / Plus
Query: 9 tgttgacagaagatagagagcactgacgatgaaatgcatggagcttaattgcatctcact 68
||||||||||||||||||||||| || ||||||||||| ||||| ||||||||||
Sbjct: 9 tgttgacagaagatagagagcacagatgatgaaatgcaaggagcca----gcatctcact 64
Query: 69 cctttgtgctctctagtcttctgtcatcacctt 101
||||||||||||||| |||||||||||||||||
Sbjct: 65 cctttgtgctctctattcttctgtcatcacctt 97
>46862_aqc-miR156b:pmrd
Length = 83
Score = 83.8 bits (42), Expect = 2e-17
Identities = 75/85 (88%), Gaps = 2/85 (2%)
Strand = Plus / Plus
Query: 12 tgacagaagatagagagcactgacgatgaaatgcatggagcttaattgcatctcactcct 71
|||||||||||||||||||| || ||||| |||||||||| | ||||||||||||||
Sbjct: 1 tgacagaagatagagagcacagatgatgatatgcatggagagtc--tgcatctcactcct 58
Query: 72 ttgtgctctctagtcttctgtcatc 96
|||||||||||| |||||||||||
Sbjct: 59 ttgtgctctctatgcttctgtcatc 83
>51600_ptc-miR156j:pmrd
Length = 100
Score = 75.8 bits (38), Expect = 6e-15
Identities = 90/104 (86%), Gaps = 5/104 (4%)
Strand = Plus / Plus
Query: 1 ggtgatgctgttgacagaagatagagagcactgacgatgaaatgc-atggagcttaattg 59
||||||| ||||||||||||||||||||||| || ||||| |||| ||||| || ||
Sbjct: 1 ggtgatgttgttgacagaagatagagagcacagatgatgatatgcaatgga-ct---ctg 56
Query: 60 catctcactcctttgtgctctctagtcttctgtcatcaccttca 103
|||| ||||||||||||||||||| ||||||||||||| ||||
Sbjct: 57 catcccactcctttgtgctctctatgcttctgtcatcactttca 100
>46925_ath-miR157b:pmrd
Length = 132
Score = 69.9 bits (35), Expect = 3e-13
Identities = 41/43 (95%)
Strand = Plus / Plus
Query: 57 ttgcatctcactcctttgtgctctctagtcttctgtcatcacc 99
|||||||| ||||||||||||||||||| ||||||||||||||
Sbjct: 71 ttgcatcttactcctttgtgctctctagccttctgtcatcacc 113
>46924_ath-miR157a:pmrd
Length = 98
Score = 69.9 bits (35), Expect = 3e-13
Identities = 41/43 (95%)
Strand = Plus / Plus
Query: 57 ttgcatctcactcctttgtgctctctagtcttctgtcatcacc 99
|||||||| ||||||||||||||||||| ||||||||||||||
Sbjct: 56 ttgcatcttactcctttgtgctctctagccttctgtcatcacc 98
>48531_gma-miR156d:pmrd
Length = 151
Score = 67.9 bits (34), Expect = 1e-12
Identities = 43/46 (93%)
Strand = Plus / Plus
Query: 58 tgcatctcactcctttgtgctctctagtcttctgtcatcaccttca 103
||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct: 95 tgcatcttactcctttgtgctctctatacttctgtcatcaccttca 140
Score = 54.0 bits (27), Expect = 2e-08
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 9 tgttgacagaagatagagagcactgacgatgaaatgcat 47
||||||||||||||||||||||| || ||||| ||||||
Sbjct: 19 tgttgacagaagatagagagcacagatgatgatatgcat 57
>52045_ptc-miRf10223-akr:pmrd
Length = 86
Score = 63.9 bits (32), Expect = 2e-11
Identities = 78/90 (86%), Gaps = 5/90 (5%)
Strand = Plus / Plus
Query: 9 tgttgacagaagatagagagcactgacgatgaaatgca-tggagcttaattgcatctcac 67
||||||||||||||||||||||| || ||||| ||||| |||| || |||||| |||
Sbjct: 1 tgttgacagaagatagagagcacagatgatgatatgcaatgga-ctc---tgcatcccac 56
Query: 68 tcctttgtgctctctagtcttctgtcatca 97
|||||||||||||||| ||||||||||||
Sbjct: 57 tcctttgtgctctctatgcttctgtcatca 86
>51599_ptc-miR156i:pmrd
Length = 99
Score = 60.0 bits (30), Expect = 3e-10
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 61 atctcactcctttgtgctctctagtcttctgtcatcaccttc 102
||||||||||||||||||||||| |||||| ||||||||||
Sbjct: 58 atctcactcctttgtgctctctatgcttctgccatcaccttc 99
Score = 52.0 bits (26), Expect = 8e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 2 gtgatgctgttgacagaagatagagagcac 31
|||||| |||||||||||||||||||||||
Sbjct: 2 gtgatgttgttgacagaagatagagagcac 31
>48695_mtr-miR156e:pmrd
Length = 172
Score = 60.0 bits (30), Expect = 3e-10
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 58 tgcatctcactcctttgtgctctctagtcttctgtcatcacc 99
||||| |||||||||||||||||||| ||||||||||||||
Sbjct: 131 tgcatatcactcctttgtgctctctatgcttctgtcatcacc 172
Score = 54.0 bits (27), Expect = 2e-08
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 9 tgttgacagaagatagagagcactgacgatgaaatgcat 47
||||||||||||||||||||||| || ||||| ||||||
Sbjct: 4 tgttgacagaagatagagagcacagatgatgatatgcat 42
>48698_mtr-miR157:pmrd
Length = 111
Score = 58.0 bits (29), Expect = 1e-09
Identities = 45/49 (91%), Gaps = 1/49 (2%)
Strand = Plus / Plus
Query: 48 ggagcttaattgcatctcact-cctttgtgctctctagtcttctgtcat 95
||||||||||||||| ||| | |||||||||||||||| ||||||||||
Sbjct: 63 ggagcttaattgcatttcatttcctttgtgctctctagacttctgtcat 111
Score = 42.1 bits (21), Expect = 8e-05
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 11 ttgacagaagatagagagcactgacgatgaaatgcat 47
|||||||||||||||| ||||| | ||||| ||||||
Sbjct: 1 ttgacagaagatagagggcactaaggatgatatgcat 37
>48631_gra-miR157b:pmrd
Length = 91
Score = 56.0 bits (28), Expect = 5e-09
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 58 tgcatctcactcctttgtgctctctagtcttctgtcatca 97
|||||| ||||||||||||||||||| ||||||||||||
Sbjct: 50 tgcatcccactcctttgtgctctctatgcttctgtcatca 89
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 tgttgacagaagatagagagcac 31
|||||||||||||||||||||||
Sbjct: 3 tgttgacagaagatagagagcac 25
>48630_gra-miR157a:pmrd
Length = 101
Score = 52.0 bits (26), Expect = 8e-08
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 58 tgcatctcactcctttgtgctctctagtcttctgtcatcacc 99
|||||| |||||||||||||||| || ||||||||||||||
Sbjct: 60 tgcatcccactcctttgtgctctttatgcttctgtcatcacc 101
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 tgttgacagaagatagagagcac 31
|||||||||||||||||||||||
Sbjct: 3 tgttgacagaagatagagagcac 25
>48393_bra-miR157a:pmrd
Length = 149
Score = 52.0 bits (26), Expect = 8e-08
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 9 tgttgacagaagatagagagcactgacgatgaaatgca 46
|||||||||||||||||||||||| | ||||| |||||
Sbjct: 12 tgttgacagaagatagagagcactaaggatgacatgca 49
>48384_bol-miR157a:pmrd
Length = 106
Score = 52.0 bits (26), Expect = 8e-08
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 9 tgttgacagaagatagagagcactgacgatgaaatgca 46
|||||||||||||||||||||||| | ||||| |||||
Sbjct: 4 tgttgacagaagatagagagcactaaggatgacatgca 41
>48338_bna-miR156c:pmrd
Length = 155
Score = 52.0 bits (26), Expect = 8e-08
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 9 tgttgacagaagatagagagcactgacgatgaaatgca 46
|||||||||||||||||||||||| | ||||| |||||
Sbjct: 16 tgttgacagaagatagagagcactaaggatgacatgca 53
>48337_bna-miR156b:pmrd
Length = 208
Score = 52.0 bits (26), Expect = 8e-08
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 9 tgttgacagaagatagagagcactgacgatgaaatgca 46
|||||||||||||||||||||||| | ||||| |||||
Sbjct: 23 tgttgacagaagatagagagcactaaggatgacatgca 60
>46926_ath-miR157c:pmrd
Length = 217
Score = 52.0 bits (26), Expect = 8e-08
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 9 tgttgacagaagatagagagcactgacgatgaaatgca 46
|||||||||||||||||||||||| | ||||| |||||
Sbjct: 22 tgttgacagaagatagagagcactaaggatgacatgca 59
Score = 42.1 bits (21), Expect = 8e-05
Identities = 40/45 (88%), Gaps = 1/45 (2%)
Strand = Plus / Plus
Query: 58 tgcatctc-actcctttgtgctctctagtcttctgtcatcacctt 101
|||||||| |||| ||||||||||||| ||||||||| ||||||
Sbjct: 151 tgcatctctactcttttgtgctctctatacttctgtcaccacctt 195
>46861_aqc-miR156a:pmrd
Length = 81
Score = 52.0 bits (26), Expect = 8e-08
Identities = 69/83 (83%), Gaps = 4/83 (4%)
Strand = Plus / Plus
Query: 12 tgacagaagatagagagcactgacgatgaaatgcatggagcttaattgcatctcactcct 71
|||||||||||||||||||| || || ||| ||||||||| ||||||||| | ||
Sbjct: 1 tgacagaagatagagagcacagatgacgaattgcatggag----tttgcatctcgatact 56
Query: 72 ttgtgctctctagtcttctgtca 94
|||||||||||| |||||||||
Sbjct: 57 ttgtgctctctatgcttctgtca 79
>54771_vvi-miR156f:pmrd
Length = 105
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 8 ctgttgacagaagatagagagcac 31
||||||||||||||||||||||||
Sbjct: 8 ctgttgacagaagatagagagcac 31
>54661_stu-miR157a:pmrd
Length = 91
Score = 46.1 bits (23), Expect = 5e-06
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 11 ttgacagaagatagagagcactgacgatgaaatgc 45
|||||||||||||||||||||| | ||||| ||||
Sbjct: 1 ttgacagaagatagagagcactaatgatgatatgc 35
>54570_smo-miR156b:pmrd
Length = 112
Score = 46.1 bits (23), Expect = 5e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 6 tgctgttgacagaagatagagagcactgacg 36
||||| |||||||||||||||||||| ||||
Sbjct: 6 tgctgctgacagaagatagagagcacagacg 36
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 74 gtgctctctagtcttctgtcatca 97
|||||||||| |||||||||||||
Sbjct: 80 gtgctctctattcttctgtcatca 103
>54532_sly-miR156a:pmrd
Length = 100
Score = 46.1 bits (23), Expect = 5e-06
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 11 ttgacagaagatagagagcactgacgatgaaatgc 45
|||||||||||||||||||||| | ||||| ||||
Sbjct: 1 ttgacagaagatagagagcactaatgatgatatgc 35
>48696_mtr-miR156f:pmrd
Length = 94
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 tgttgacagaagatagagagcac 31
|||||||||||||||||||||||
Sbjct: 4 tgttgacagaagatagagagcac 26
>48530_gma-miR156c:pmrd
Length = 185
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 tgttgacagaagatagagagcac 31
|||||||||||||||||||||||
Sbjct: 144 tgttgacagaagatagagagcac 166
>48790_nta-miR157:pmrd
Length = 131
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 11 ttgacagaagatagagagcactgacgatga 40
||||||||||||||||||||| || |||||
Sbjct: 1 ttgacagaagatagagagcacagatgatga 30
>46927_ath-miR157d:pmrd
Length = 221
Score = 44.1 bits (22), Expect = 2e-05
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 68 tcctttgtgctctctagtcttctgtcatcacctt 101
|||| ||||||||||| ||||||||||||||||
Sbjct: 167 tcctatgtgctctctatgcttctgtcatcacctt 200
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 12 tgacagaagatagagagcact 32
|||||||||||||||||||||
Sbjct: 24 tgacagaagatagagagcact 44
>54534_sly-miR156c:pmrd
Length = 83
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 ttgacagaagatagagagcac 31
|||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagcac 21
>54533_sly-miR156b:pmrd
Length = 84
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 ttgacagaagatagagagcac 31
|||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagcac 21
>48675_lja-miR157a:pmrd
Length = 58
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 ttgacagaagatagagagcac 31
|||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagcac 21
>48642_han-miR157a:pmrd
Length = 86
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 ttgacagaagatagagagcac 31
|||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagcac 21
>46857_ahy-miR157k:pmrd
Length = 139
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 73 tgtgctctctagtcttctgtcatca 97
||||||||||| |||||||||||||
Sbjct: 84 tgtgctctctactcttctgtcatca 108
>54537_sly-miR157c:pmrd
Length = 123
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttgacagaagatagagagca 30
||||||||||||||||||||
Sbjct: 103 ttgacagaagatagagagca 122
>54536_sly-miR157b:pmrd
Length = 430
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttgacagaagatagagagca 30
||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagca 20
>54535_sly-miR157a:pmrd
Length = 53
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttgacagaagatagagagca 30
||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagca 20
>51552_pta-miR156b:pmrd
Length = 83
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 tgacagaagatagagagcac 31
||||||||||||||||||||
Sbjct: 3 tgacagaagatagagagcac 22
>51551_pta-miR156a:pmrd
Length = 83
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 tgacagaagatagagagcac 31
||||||||||||||||||||
Sbjct: 3 tgacagaagatagagagcac 22
>51323_pco-miR157:pmrd
Length = 184
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttgacagaagatagagagca 30
||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagca 20
>48677_lja-miR157c:pmrd
Length = 460
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttgacagaagatagagagca 30
||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagca 20
>48670_ini-miR157b:pmrd
Length = 183
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttgacagaagatagagagca 30
||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagca 20
>48669_ini-miR157a:pmrd
Length = 126
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttgacagaagatagagagca 30
||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagca 20
>48668_iba-miR157:pmrd
Length = 283
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttgacagaagatagagagca 30
||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagca 20
