miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>51601_ptc-miR156k:pmrd
Length = 101
Score = 200 bits (101), Expect = 1e-52
Identities = 101/101 (100%)
Strand = Plus / Plus
Query: 1 ttatgcatgctgacagaagagagggagcacaaccctgtaatagctaaagagagtctttgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttatgcatgctgacagaagagagggagcacaaccctgtaatagctaaagagagtctttgc 60
Query: 61 ttttgttggactgtgctttctcttcttctgtcaccaaccaa 101
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttttgttggactgtgctttctcttcttctgtcaccaaccaa 101
>48676_lja-miR157b:pmrd
Length = 86
Score = 79.8 bits (40), Expect = 3e-16
Identities = 74/84 (88%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 11 tgacagaagagagggagcacaaccctgtaatagctaaagagagtctttgcttttgtt-gg 69
||||||||||||| ||||||||||| | ||| | |||||||||||||||||||||| ||
Sbjct: 2 tgacagaagagagagagcacaacccaggaatggtgaaagagagtctttgcttttgttggg 61
Query: 70 actgtgctttctcttcttctgtca 93
| |||||| || ||||||||||||
Sbjct: 62 agtgtgctctcccttcttctgtca 85
>54766_vvi-miR156a:pmrd
Length = 104
Score = 65.9 bits (33), Expect = 5e-12
Identities = 73/84 (86%), Gaps = 3/84 (3%)
Strand = Plus / Plus
Query: 11 tgacagaagagagggagcacaaccctgtaatagctaaagagagtctttgcttttgtt-gg 69
||||||||||||||||||||||||| | | |||||| ||| ||||||||||| || ||
Sbjct: 11 tgacagaagagagggagcacaacccagcatcagctaa--agactctttgcttttcttggg 68
Query: 70 actgtgctttctcttcttctgtca 93
| |||||| |||||||||||||||
Sbjct: 69 agtgtgctctctcttcttctgtca 92
>48529_gma-miR156b:pmrd
Length = 120
Score = 65.9 bits (33), Expect = 5e-12
Identities = 77/89 (86%), Gaps = 2/89 (2%)
Strand = Plus / Plus
Query: 6 catgctgacagaagagagggagcacaaccctgtaatagctaaagagagtctttgcttttg 65
|||| ||||||||||||| ||||||||||| | ||| ||||||| |||||||||| ||||
Sbjct: 16 catgttgacagaagagagagagcacaacccgggaatggctaaag-gagtctttgcctttg 74
Query: 66 tt-ggactgtgctttctcttcttctgtca 93
|| ||| ||||| ||||||| |||||||
Sbjct: 75 ttgggagtgtgccctctcttcctctgtca 103
>46903_aqc-miR529:pmrd
Length = 125
Score = 61.9 bits (31), Expect = 8e-11
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 11 tgacagaagagagggagcacaaccctgtaatagctaaagagagtctttgcttttgttgg 69
||||||||||||| ||||||||||| | ||||||||||||||||| ||||||||||
Sbjct: 18 tgacagaagagagagagcacaacccatcatcagctaaagagagtcttttcttttgttgg 76
>54920_zma-miR156j:pmrd
Length = 125
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 11 tgacagaagagagggagcacaaccc 35
||||||||||||| |||||||||||
Sbjct: 21 tgacagaagagagagagcacaaccc 45
>54396_sbi-miR156d:pmrd
Length = 125
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 11 tgacagaagagagggagcacaaccc 35
||||||||||||| |||||||||||
Sbjct: 21 tgacagaagagagagagcacaaccc 45
>48811_osa-miR156k:pmrd
Length = 106
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 11 tgacagaagagagggagcacaaccc 35
||||||||||||| |||||||||||
Sbjct: 11 tgacagaagagagagagcacaaccc 35
>46857_ahy-miR157k:pmrd
Length = 139
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 11 tgacagaagagagggagcacaaccc 35
||||||||||||| |||||||||||
Sbjct: 22 tgacagaagagagagagcacaaccc 46
>48417_can-miR156b:pmrd
Length = 65
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 tgacagaagagagggagcac 30
||||||||||||||||||||
Sbjct: 46 tgacagaagagagggagcac 65
