miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;AARH01017144.1/4716-4901 3694:Populus trichocarpa
Length = 186
Score = 355 bits (179), Expect = 1e-97
Identities = 182/183 (99%)
Strand = Plus / Plus
Query: 1 gattagggagtggagctccttgaagtccaatagaggttcttgctgggtagattaagctgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gattagggagtggagctccttgaagtccaatagaggttcttgctgggtagattaagctgc 60
Query: 61 taagctatggatccacagtcctatctatcaactgaaggataggtttgcggcttgcatatc 120
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 61 taagctatggatccacagtcctatctatcaaccgaaggataggtttgcggcttgcatatc 120
Query: 121 tcaggagctttattgcctaatgttagatccctttttggattgaagggagctctaaaccca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tcaggagctttattgcctaatgttagatccctttttggattgaagggagctctaaaccca 180
Query: 181 taa 183
|||
Sbjct: 181 taa 183
>RF00638;MIR159;AY728395.1/6-170 3694:Populus trichocarpa
Length = 165
Score = 111 bits (56), Expect = 3e-24
Identities = 65/68 (95%)
Strand = Plus / Plus
Query: 106 tgcggcttgcatatctcaggagctttattgcctaatgttagatccctttttggattgaag 165
||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct: 98 tgcggcttgcatatctcaggagctttattacctaatgttagatctttttttggattgaag 157
Query: 166 ggagctct 173
||||||||
Sbjct: 158 ggagctct 165
>RF00638;MIR159;AASG02012489.1/1166-1359 3988:Ricinus communis
(castor bean)
Length = 194
Score = 105 bits (53), Expect = 2e-22
Identities = 147/176 (83%), Gaps = 8/176 (4%)
Strand = Plus / Plus
Query: 7 ggagtggagctccttgaagtccaatagaggttcttgctgggtagattaagctgctaagct 66
|||||||||||||||||||||||||||||| ||||| |||||||||| ||||||| ||||
Sbjct: 7 ggagtggagctccttgaagtccaatagaggatcttgatgggtagattgagctgctgagct 66
Query: 67 atggat-ccacagtcctat------ctatca-actgaaggataggtttgcggcttgcata 118
|||||| |||||| ||||| || | | | ||||||| ||| ||||||||||
Sbjct: 67 atggatcccacagccctataagcagagattataattttggataggcttgtggcttgcata 126
Query: 119 tctcaggagctttattgcctaatgttagatccctttttggattgaagggagctcta 174
|||||||||||| ||| ||| | |||||||| | |||||||||||||||||||||
Sbjct: 127 tctcaggagcttcattaccttgtattagatccttgtttggattgaagggagctcta 182
>RF00638;MIR159;CAAP02007000.1/8870-9063 29760:Vitis vinifera
Length = 194
Score = 87.7 bits (44), Expect = 5e-17
Identities = 62/68 (91%)
Strand = Plus / Plus
Query: 7 ggagtggagctccttgaagtccaatagaggttcttgctgggtagattaagctgctaagct 66
|||||||||||||||||||||||||||||| |||| ||||||||||| ||||||| | |
Sbjct: 7 ggagtggagctccttgaagtccaatagagggtcttactgggtagattgagctgctgactt 66
Query: 67 atggatcc 74
||||||||
Sbjct: 67 atggatcc 74
>RF00638;MIR159;ABIM01001657.1/35314-35507 3649:Carica papaya
(papaya)
Length = 194
Score = 63.9 bits (32), Expect = 7e-10
Identities = 53/60 (88%)
Strand = Plus / Plus
Query: 13 gagctccttgaagtccaatagaggttcttgctgggtagattaagctgctaagctatggat 72
|||||||||||||||||||||||| | |||| |||| |||| |||||| ||||||||||
Sbjct: 13 gagctccttgaagtccaatagaggattttgcagggttgattgagctgccgagctatggat 72
Score = 48.1 bits (24), Expect = 4e-05
Identities = 65/76 (85%), Gaps = 2/76 (2%)
Strand = Plus / Plus
Query: 100 taggtttgcggcttgcatatctcaggagctttatt-gcctaatgttagatccctttttgg 158
|||| |||||| |||||||||||||||||| ||| ||||| ||| |||| | |||||
Sbjct: 108 taggcttgcggtttgcatatctcaggagctgcattaccctaagctta-atccttgtttgg 166
Query: 159 attgaagggagctcta 174
||||||||||||||||
Sbjct: 167 attgaagggagctcta 182
>RF00638;MIR159;AC235792.1/25881-25682 4081:Solanum lycopersicum
Length = 200
Score = 56.0 bits (28), Expect = 2e-07
Identities = 71/84 (84%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 6 gggagtggagctccttgaagtccaatagaggttcttgctgggtagattaagctgctaagc 65
||||||||||||||||||||||||| ||| | ||| | || |||||| ||||||| | |
Sbjct: 6 gggagtggagctccttgaagtccaacagaagatctaacaggttagattgagctgctgacc 65
Query: 66 tatgga-tccacagtcctatctat 88
|||||| ||| ||| |||||||||
Sbjct: 66 tatggattcctcagccctatctat 89
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 152 tttttggattgaagggagctcta 174
|||||||||||||||||||||||
Sbjct: 166 tttttggattgaagggagctcta 188
