miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>51603_ptc-miR159b:pmrd
Length = 187
Score = 329 bits (166), Expect = 4e-91
Identities = 180/187 (96%)
Strand = Plus / Plus
Query: 1 gattatggagtggagctccttgaagtccaatagaagctcctgctgggtagatcgagctgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gattatggagtggagctccttgaagtccaatagaagctcctgctgggtagatcgagctgc 60
Query: 61 tgagctatgaatcccacagccctatcaccatcagtcattttgatgggcctgcggcttgca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tgagctatgaatcccacagccctatcaccatcagtcattttgatgggcctgcggcttgca 120
Query: 121 tatctcaggagctttattacctaatgttagatcnnnnnnnggattgaagggagctctaaa 180
||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 121 tatctcaggagctttattacctaatgttagatctttttttggattgaagggagctctaaa 180
Query: 181 cctttga 187
|||||||
Sbjct: 181 cctttga 187
>51604_ptc-miR159c:pmrd
Length = 183
Score = 107 bits (54), Expect = 3e-24
Identities = 151/182 (82%), Gaps = 4/182 (2%)
Strand = Plus / Plus
Query: 1 gattatggagtggagctccttgaagtccaatagaagctcctgctgggtagatcgagctgc 60
||||| |||||||||||||||||||||||||||| | || |||||||||||| ||||||
Sbjct: 1 gattagggagtggagctccttgaagtccaatagaggttcttgctgggtagattaagctgc 60
Query: 61 tgagctatgaatcccacagccctatcaccatcagtcattttgatgggcctgcggcttgca 120
| ||||||| |||| |||| |||||| |||| | ||| || |||||||||||
Sbjct: 61 taagctatggatcc-acagtcctatct--atcaaccgaag-gataggtttgcggcttgca 116
Query: 121 tatctcaggagctttattacctaatgttagatcnnnnnnnggattgaagggagctctaaa 180
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct: 117 tatctcaggagctttattgcctaatgttagatccctttttggattgaagggagctctaaa 176
Query: 181 cc 182
||
Sbjct: 177 cc 178
>51602_ptc-miR159a:pmrd
Length = 183
Score = 107 bits (54), Expect = 3e-24
Identities = 151/182 (82%), Gaps = 4/182 (2%)
Strand = Plus / Plus
Query: 1 gattatggagtggagctccttgaagtccaatagaagctcctgctgggtagatcgagctgc 60
||||| |||||||||||||||||||||||||||| | || |||||||||||| ||||||
Sbjct: 1 gattagggagtggagctccttgaagtccaatagaggttcttgctgggtagattaagctgc 60
Query: 61 tgagctatgaatcccacagccctatcaccatcagtcattttgatgggcctgcggcttgca 120
| ||||||| |||| |||| |||||| |||| | ||| || |||||||||||
Sbjct: 61 taagctatggatcc-acagtcctatct--atcaa-ctgaaggataggtttgcggcttgca 116
Query: 121 tatctcaggagctttattacctaatgttagatcnnnnnnnggattgaagggagctctaaa 180
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct: 117 tatctcaggagctttattgcctaatgttagatccctttttggattgaagggagctctaaa 176
Query: 181 cc 182
||
Sbjct: 177 cc 178
>52093_ptc-miRf10271-akr:pmrd
Length = 174
Score = 103 bits (52), Expect = 5e-23
Identities = 146/176 (82%), Gaps = 4/176 (2%)
Strand = Plus / Plus
Query: 7 ggagtggagctccttgaagtccaatagaagctcctgctgggtagatcgagctgctgagct 66
|||||||||||||||||||||||||||| | || |||||||||||| ||||||| ||||
Sbjct: 2 ggagtggagctccttgaagtccaatagaggttcttgctgggtagattaagctgctaagct 61
Query: 67 atgaatcccacagccctatcaccatcagtcattttgatgggcctgcggcttgcatatctc 126
||| |||| |||| |||||| |||| | ||| || |||||||||||||||||
Sbjct: 62 atggatcc-acagtcctatct--atcaaccgaag-gataggtttgcggcttgcatatctc 117
Query: 127 aggagctttattacctaatgttagatcnnnnnnnggattgaagggagctctaaacc 182
|||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct: 118 aggagctttattgcctaatgttagatccctttttggattgaagggagctctaaacc 173
>54777_vvi-miR159c:pmrd
Length = 190
Score = 97.6 bits (49), Expect = 3e-21
Identities = 73/81 (90%)
Strand = Plus / Plus
Query: 6 tggagtggagctccttgaagtccaatagaagctcctgctgggtagatcgagctgctgagc 65
||||||||||||||||||||||||||||| | || | |||||||||| ||||||||||
Sbjct: 4 tggagtggagctccttgaagtccaatagagggtcttactgggtagattgagctgctgact 63
Query: 66 tatgaatcccacagccctatc 86
|||| ||||||||||||||||
Sbjct: 64 tatggatcccacagccctatc 84
>48539_gma-miR159a:pmrd
Length = 214
Score = 69.9 bits (35), Expect = 7e-13
Identities = 68/79 (86%)
Strand = Plus / Plus
Query: 1 gattatggagtggagctccttgaagtccaatagaagctcctgctgggtagatcgagctgc 60
||||||| ||||||||||||||||||||||| || | || | |||||| || |||||||
Sbjct: 11 gattatgaagtggagctccttgaagtccaattgaggatcttactgggtgaattgagctgc 70
Query: 61 tgagctatgaatcccacag 79
| ||||||| |||||||||
Sbjct: 71 ttagctatggatcccacag 89
>54378_pvu-miR159:pmrd
Length = 174
Score = 67.9 bits (34), Expect = 3e-12
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 10 gtggagctccttgaagtccaatagaagctcctgctgggtagatcgagctgctgagctatg 69
|||||||||||||||||||||| || | || | |||||| ||| |||||||| |||||||
Sbjct: 1 gtggagctccttgaagtccaattgaggatcttactgggtggattgagctgcttagctatg 60
Query: 70 aatcccacag 79
|||||||||
Sbjct: 61 gatcccacag 70
>54377_pvu-miR159:pmrd
Length = 174
Score = 67.9 bits (34), Expect = 3e-12
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 10 gtggagctccttgaagtccaatagaagctcctgctgggtagatcgagctgctgagctatg 69
|||||||||||||||||||||| || | || | |||||| ||| |||||||| |||||||
Sbjct: 1 gtggagctccttgaagtccaattgaggatcttactgggtggattgagctgcttagctatg 60
Query: 70 aatcccacag 79
|||||||||
Sbjct: 61 gatcccacag 70
>46931_ath-miR159a:pmrd
Length = 184
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 116 ttgcatatctcaggagcttta 136
|||||||||||||||||||||
Sbjct: 114 ttgcatatctcaggagcttta 134
>54540_sly-miR159:pmrd
Length = 177
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 tggagctccttgaagtccaa 30
||||||||||||||||||||
Sbjct: 1 tggagctccttgaagtccaa 20
>48395_bra-miR159a:pmrd
Length = 185
Score = 40.1 bits (20), Expect = 6e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 113 ggcttgcatatctcaggagcttta 136
||||| ||||||||||||||||||
Sbjct: 111 ggcttacatatctcaggagcttta 134
>48339_bna-miR159:pmrd
Length = 183
Score = 40.1 bits (20), Expect = 6e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 113 ggcttgcatatctcaggagcttta 136
||||| ||||||||||||||||||
Sbjct: 109 ggcttacatatctcaggagcttta 132
