miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>51604_ptc-miR159c:pmrd
Length = 183
Score = 363 bits (183), Expect = e-101
Identities = 183/183 (100%)
Strand = Plus / Plus
Query: 1 gattagggagtggagctccttgaagtccaatagaggttcttgctgggtagattaagctgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gattagggagtggagctccttgaagtccaatagaggttcttgctgggtagattaagctgc 60
Query: 61 taagctatggatccacagtcctatctatcaaccgaaggataggtttgcggcttgcatatc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 taagctatggatccacagtcctatctatcaaccgaaggataggtttgcggcttgcatatc 120
Query: 121 tcaggagctttattgcctaatgttagatccctttttggattgaagggagctctaaaccca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tcaggagctttattgcctaatgttagatccctttttggattgaagggagctctaaaccca 180
Query: 181 taa 183
|||
Sbjct: 181 taa 183
>51602_ptc-miR159a:pmrd
Length = 183
Score = 355 bits (179), Expect = 7e-99
Identities = 182/183 (99%)
Strand = Plus / Plus
Query: 1 gattagggagtggagctccttgaagtccaatagaggttcttgctgggtagattaagctgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gattagggagtggagctccttgaagtccaatagaggttcttgctgggtagattaagctgc 60
Query: 61 taagctatggatccacagtcctatctatcaaccgaaggataggtttgcggcttgcatatc 120
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 61 taagctatggatccacagtcctatctatcaactgaaggataggtttgcggcttgcatatc 120
Query: 121 tcaggagctttattgcctaatgttagatccctttttggattgaagggagctctaaaccca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tcaggagctttattgcctaatgttagatccctttttggattgaagggagctctaaaccca 180
Query: 181 taa 183
|||
Sbjct: 181 taa 183
>52093_ptc-miRf10271-akr:pmrd
Length = 174
Score = 345 bits (174), Expect = 7e-96
Identities = 174/174 (100%)
Strand = Plus / Plus
Query: 6 gggagtggagctccttgaagtccaatagaggttcttgctgggtagattaagctgctaagc 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gggagtggagctccttgaagtccaatagaggttcttgctgggtagattaagctgctaagc 60
Query: 66 tatggatccacagtcctatctatcaaccgaaggataggtttgcggcttgcatatctcagg 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tatggatccacagtcctatctatcaaccgaaggataggtttgcggcttgcatatctcagg 120
Query: 126 agctttattgcctaatgttagatccctttttggattgaagggagctctaaaccc 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 agctttattgcctaatgttagatccctttttggattgaagggagctctaaaccc 174
>51603_ptc-miR159b:pmrd
Length = 187
Score = 133 bits (67), Expect = 5e-32
Identities = 156/182 (85%), Gaps = 4/182 (2%)
Strand = Plus / Plus
Query: 1 gattagggagtggagctccttgaagtccaatagaggttcttgctgggtagattaagctgc 60
||||| |||||||||||||||||||||||||||| | || |||||||||||| ||||||
Sbjct: 1 gattatggagtggagctccttgaagtccaatagaagctcctgctgggtagatcgagctgc 60
Query: 61 taagctatggatcc-acagtcctatct--atcaaccgaag-gataggtttgcggcttgca 116
| ||||||| |||| |||| |||||| |||| | ||| || |||||||||||
Sbjct: 61 tgagctatgaatcccacagccctatcaccatcagtcattttgatgggcctgcggcttgca 120
Query: 117 tatctcaggagctttattgcctaatgttagatccctttttggattgaagggagctctaaa 176
|||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct: 121 tatctcaggagctttattacctaatgttagatctttttttggattgaagggagctctaaa 180
Query: 177 cc 178
||
Sbjct: 181 cc 182
>54777_vvi-miR159c:pmrd
Length = 190
Score = 87.7 bits (44), Expect = 3e-18
Identities = 62/68 (91%)
Strand = Plus / Plus
Query: 7 ggagtggagctccttgaagtccaatagaggttcttgctgggtagattaagctgctaagct 66
|||||||||||||||||||||||||||||| |||| ||||||||||| ||||||| | |
Sbjct: 5 ggagtggagctccttgaagtccaatagagggtcttactgggtagattgagctgctgactt 64
Query: 67 atggatcc 74
||||||||
Sbjct: 65 atggatcc 72
>54378_pvu-miR159:pmrd
Length = 174
Score = 81.8 bits (41), Expect = 2e-16
Identities = 59/65 (90%)
Strand = Plus / Plus
Query: 10 gtggagctccttgaagtccaatagaggttcttgctgggtagattaagctgctaagctatg 69
|||||||||||||||||||||| |||| |||| |||||| |||| ||||||| |||||||
Sbjct: 1 gtggagctccttgaagtccaattgaggatcttactgggtggattgagctgcttagctatg 60
Query: 70 gatcc 74
|||||
Sbjct: 61 gatcc 65
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 154 tttggattgaagggagctcta 174
|||||||||||||||||||||
Sbjct: 153 tttggattgaagggagctcta 173
>54377_pvu-miR159:pmrd
Length = 174
Score = 81.8 bits (41), Expect = 2e-16
Identities = 59/65 (90%)
Strand = Plus / Plus
Query: 10 gtggagctccttgaagtccaatagaggttcttgctgggtagattaagctgctaagctatg 69
|||||||||||||||||||||| |||| |||| |||||| |||| ||||||| |||||||
Sbjct: 1 gtggagctccttgaagtccaattgaggatcttactgggtggattgagctgcttagctatg 60
Query: 70 gatcc 74
|||||
Sbjct: 61 gatcc 65
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 154 tttggattgaagggagctcta 174
|||||||||||||||||||||
Sbjct: 153 tttggattgaagggagctcta 173
>48539_gma-miR159a:pmrd
Length = 214
Score = 75.8 bits (38), Expect = 1e-14
Identities = 59/66 (89%)
Strand = Plus / Plus
Query: 9 agtggagctccttgaagtccaatagaggttcttgctgggtagattaagctgctaagctat 68
||||||||||||||||||||||| |||| |||| |||||| ||| ||||||| ||||||
Sbjct: 19 agtggagctccttgaagtccaattgaggatcttactgggtgaattgagctgcttagctat 78
Query: 69 ggatcc 74
||||||
Sbjct: 79 ggatcc 84
Score = 44.1 bits (22), Expect = 4e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 154 tttggattgaagggagctctaaaccc 179
||||||||||||||||||||| ||||
Sbjct: 175 tttggattgaagggagctctacaccc 200
>54540_sly-miR159:pmrd
Length = 177
Score = 48.1 bits (24), Expect = 2e-06
Identities = 66/79 (83%), Gaps = 2/79 (2%)
Strand = Plus / Plus
Query: 98 gataggtttgcggcttgcatatctcaggagctttattg--cctaatgttagatccctttt 155
||||||||| || |||||||| |||||||||||||| || |||| |||| ||||
Sbjct: 99 gataggttttgggtttgcatatgtcaggagctttattttaccctttgtttgatcattttt 158
Query: 156 tggattgaagggagctcta 174
|||||||||||||||||||
Sbjct: 159 tggattgaagggagctcta 177
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 tggagctccttgaagtccaa 30
||||||||||||||||||||
Sbjct: 1 tggagctccttgaagtccaa 20
>54674_tae-miR159b:pmrd
Length = 255
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 149 ccctttttggattgaagggagctct 173
|||| ||||||||||||||||||||
Sbjct: 225 ccctctttggattgaagggagctct 249
>48825_osa-miR159m:pmrd
Length = 249
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 149 ccctttttggattgaagggagctct 173
|||| ||||||||||||||||||||
Sbjct: 224 ccctctttggattgaagggagctct 248
>48819_osa-miR159a:pmrd
Length = 272
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 149 ccctttttggattgaagggagctct 173
|||| ||||||||||||||||||||
Sbjct: 237 ccctctttggattgaagggagctct 261
>48796_oru-miR159:pmrd
Length = 274
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 149 ccctttttggattgaagggagctct 173
|||| ||||||||||||||||||||
Sbjct: 237 ccctctttggattgaagggagctct 261
>48701_mtr-miR159c:pmrd
Length = 44
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 154 tttggattgaagggagctcta 174
|||||||||||||||||||||
Sbjct: 1 tttggattgaagggagctcta 21
>48699_mtr-miR159a:pmrd
Length = 168
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 154 tttggattgaagggagctcta 174
|||||||||||||||||||||
Sbjct: 148 tttggattgaagggagctcta 168
>48686_ltu-miR159:pmrd
Length = 345
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 154 tttggattgaagggagctcta 174
|||||||||||||||||||||
Sbjct: 1 tttggattgaagggagctcta 21
>48395_bra-miR159a:pmrd
Length = 185
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 154 tttggattgaagggagctcta 174
|||||||||||||||||||||
Sbjct: 163 tttggattgaagggagctcta 183
Score = 40.1 bits (20), Expect = 6e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 109 ggcttgcatatctcaggagcttta 132
||||| ||||||||||||||||||
Sbjct: 111 ggcttacatatctcaggagcttta 134
>48339_bna-miR159:pmrd
Length = 183
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 154 tttggattgaagggagctcta 174
|||||||||||||||||||||
Sbjct: 161 tttggattgaagggagctcta 181
Score = 40.1 bits (20), Expect = 6e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 109 ggcttgcatatctcaggagcttta 132
||||| ||||||||||||||||||
Sbjct: 109 ggcttacatatctcaggagcttta 132
>46932_ath-miR159b:pmrd
Length = 196
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 54 aagctgctaagctatggatcc 74
|||||||||||||||||||||
Sbjct: 47 aagctgctaagctatggatcc 67
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 154 tttggattgaagggagctct 173
||||||||||||||||||||
Sbjct: 168 tttggattgaagggagctct 187
>46931_ath-miR159a:pmrd
Length = 184
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 54 aagctgctaagctatggatcc 74
|||||||||||||||||||||
Sbjct: 46 aagctgctaagctatggatcc 66
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 112 ttgcatatctcaggagcttta 132
|||||||||||||||||||||
Sbjct: 114 ttgcatatctcaggagcttta 134
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 154 tttggattgaagggagctcta 174
|||||||||||||||||||||
Sbjct: 163 tttggattgaagggagctcta 183
