miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;AARH01006065.1/469812-470008 3694:Populus
trichocarpa
Length = 197
Score = 385 bits (194), Expect = e-106
Identities = 194/194 (100%)
Strand = Plus / Plus
Query: 1 ttgtaaatttgggagctttctttggttcaaaatgaggaaagaaagtgggtatactcgtct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttgtaaatttgggagctttctttggttcaaaatgaggaaagaaagtgggtatactcgtct 60
Query: 61 gcttgttcatggatacctctgggttgcgcaggatatattagttagggctacagcttaagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gcttgttcatggatacctctgggttgcgcaggatatattagttagggctacagcttaagg 120
Query: 121 gtttgcatggccaaggagacgttgcctgccttctcctttcgtttcttggattgaagggag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtttgcatggccaaggagacgttgcctgccttctcctttcgtttcttggattgaagggag 180
Query: 181 ctcctacatgtatc 194
||||||||||||||
Sbjct: 181 ctcctacatgtatc 194
>RF00638;MIR159;ABIM01022236.1/30966-30764 3649:Carica papaya
(papaya)
Length = 203
Score = 60.0 bits (30), Expect = 1e-08
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 147 tgccttctcctttcgtttcttggattgaagggagctcc 184
||||||||| |||| |||||||||||||||||||||||
Sbjct: 153 tgccttctcttttcctttcttggattgaagggagctcc 190
>RF00638;MIR159;AASG02000051.1/89024-89224 3988:Ricinus communis
(castor bean)
Length = 201
Score = 54.0 bits (27), Expect = 7e-07
Identities = 64/75 (85%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 111 cagcttaagggtttgcatggccaaggagacgttgcctgccttctcctttcgtttcttgga 170
||||||||||||||||||| || |||||||| | | ||||| |||||| || |||||
Sbjct: 116 cagcttaagggtttgcatgacctgggagacgt-gtttcccttcccctttccttaattgga 174
Query: 171 ttgaagggagctcct 185
|||||||||||||||
Sbjct: 175 ttgaagggagctcct 189
Score = 46.1 bits (23), Expect = 2e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 57 gtctgcttgttcatggatacctctgggttgc 87
||||||| |||||||||||||| ||||||||
Sbjct: 60 gtctgctagttcatggatacctatgggttgc 90
