miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>51606_ptc-miR159e:pmrd
Length = 192
Score = 381 bits (192), Expect = e-106
Identities = 192/192 (100%)
Strand = Plus / Plus
Query: 1 accattaaataggagcttgctcactccagatctgaaaggaggtgataggaaaccacttct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 accattaaataggagcttgctcactccagatctgaaaggaggtgataggaaaccacttct 60
Query: 61 gctacttcatgaatacccgtgggtgtgcgcgtagccatggtgagctgcgcaggctaaggg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gctacttcatgaatacccgtgggtgtgcgcgtagccatggtgagctgcgcaggctaaggg 120
Query: 121 tctgcatgtgctaggagatgtggttgccttgatctttttggtcttggggtgaagggagct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tctgcatgtgctaggagatgtggttgccttgatctttttggtcttggggtgaagggagct 180
Query: 181 cctatagtccca 192
||||||||||||
Sbjct: 181 cctatagtccca 192
>51607_ptc-miR159f:pmrd
Length = 201
Score = 71.9 bits (36), Expect = 2e-13
Identities = 66/76 (86%)
Strand = Plus / Plus
Query: 106 tgcgcaggctaagggtctgcatgtgctaggagatgtggttgccttgatctttttggtctt 165
||||||||||||||||||||||| |||||||| |||||| || ||| | |||| || ||
Sbjct: 116 tgcgcaggctaagggtctgcatgacctaggagacgtggttaccctgaccctttttgtatt 175
Query: 166 ggggtgaagggagctc 181
|| |||||||||||||
Sbjct: 176 ggagtgaagggagctc 191
>54775_vvi-miR159a:pmrd
Length = 194
Score = 63.9 bits (32), Expect = 4e-11
Identities = 44/48 (91%)
Strand = Plus / Plus
Query: 134 ggagatgtggttgccttgatctttttggtcttggggtgaagggagctc 181
||||| |||||||||||||||||| ||| ||||| |||||||||||||
Sbjct: 135 ggagaagtggttgccttgatctttctggccttggagtgaagggagctc 182
>48540_gma-miR159b:pmrd
Length = 186
Score = 46.1 bits (23), Expect = 1e-05
Identities = 57/67 (85%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 116 aagggtctgcatgtgctaggagatgtggttgccttgatctttttggtcttggggtgaagg 175
|||||| |||||| || ||||||| | || |||||||||||| ||| |||| |||||||
Sbjct: 110 aagggtttgcatgccctgggagatgagtttaccttgatctttt-ggtattggagtgaagg 168
Query: 176 gagctcc 182
|||||||
Sbjct: 169 gagctcc 175
