miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;AARH01006065.1/468133-468327 3694:Populus
trichocarpa
Length = 195
Score = 381 bits (192), Expect = e-105
Identities = 192/192 (100%)
Strand = Plus / Plus
Query: 1 accattaaataggagcttgctcactccagatctgaaaggaggtgataggaaaccacttct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 accattaaataggagcttgctcactccagatctgaaaggaggtgataggaaaccacttct 60
Query: 61 gctacttcatgaatacccgtgggtgtgcgcgtagccatggtgagctgcgcaggctaaggg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gctacttcatgaatacccgtgggtgtgcgcgtagccatggtgagctgcgcaggctaaggg 120
Query: 121 tctgcatgtgctaggagatgtggttgccttgatctttttggtcttggggtgaagggagct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tctgcatgtgctaggagatgtggttgccttgatctttttggtcttggggtgaagggagct 180
Query: 181 cctatagtccca 192
||||||||||||
Sbjct: 181 cctatagtccca 192
>RF00638;MIR159;ABIM01022236.1/33140-32940 3649:Carica papaya
(papaya)
Length = 201
Score = 79.8 bits (40), Expect = 1e-14
Identities = 67/76 (88%)
Strand = Plus / Plus
Query: 106 tgcgcaggctaagggtctgcatgtgctaggagatgtggttgccttgatctttttggtctt 165
|||||||||||||||| |||||| || |||||| ||||| | |||||||||||||| ||
Sbjct: 112 tgcgcaggctaagggtttgcatgagccaggagacatggttcctttgatctttttggtatt 171
Query: 166 ggggtgaagggagctc 181
|| |||||||||||||
Sbjct: 172 ggagtgaagggagctc 187
>RF00638;MIR159;AARH01006065.1/463210-463415 3694:Populus
trichocarpa
Length = 206
Score = 71.9 bits (36), Expect = 3e-12
Identities = 66/76 (86%)
Strand = Plus / Plus
Query: 106 tgcgcaggctaagggtctgcatgtgctaggagatgtggttgccttgatctttttggtctt 165
||||||||||||||||||||||| |||||||| |||||| || ||| | |||| || ||
Sbjct: 117 tgcgcaggctaagggtctgcatgacctaggagacgtggttaccctgaccctttttgtatt 176
Query: 166 ggggtgaagggagctc 181
|| |||||||||||||
Sbjct: 177 ggagtgaagggagctc 192
>RF00638;MIR159;AM454957.2/557-754 29760:Vitis vinifera
Length = 198
Score = 63.9 bits (32), Expect = 8e-10
Identities = 44/48 (91%)
Strand = Plus / Plus
Query: 134 ggagatgtggttgccttgatctttttggtcttggggtgaagggagctc 181
||||| |||||||||||||||||| ||| ||||| |||||||||||||
Sbjct: 137 ggagaagtggttgccttgatctttctggccttggagtgaagggagctc 184
>RF00638;MIR159;AASG02000051.1/79825-80023 3988:Ricinus communis
(castor bean)
Length = 199
Score = 56.0 bits (28), Expect = 2e-07
Identities = 64/76 (84%)
Strand = Plus / Plus
Query: 106 tgcgcaggctaagggtctgcatgtgctaggagatgtggttgccttgatctttttggtctt 165
|||||||||||||||| |||||| || ||||| |||||| |||| ||||||| | ||
Sbjct: 110 tgcgcaggctaagggtttgcatgacctgggagacgtggttaccttcttcttttttatatt 169
Query: 166 ggggtgaagggagctc 181
|| |||||||||||||
Sbjct: 170 ggagtgaagggagctc 185
