miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>51607_ptc-miR159f:pmrd
Length = 201
Score = 398 bits (201), Expect = e-112
Identities = 201/201 (100%)
Strand = Plus / Plus
Query: 1 gaggctcaatggagctctccccactccatgcctgaaaggagttcgatggtagaccatggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gaggctcaatggagctctccccactccatgcctgaaaggagttcgatggtagaccatggc 60
Query: 61 tgctagttcatgaatacccttgggtgcgcagaattagcaacggtgcaggcgaagttgcgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tgctagttcatgaatacccttgggtgcgcagaattagcaacggtgcaggcgaagttgcgc 120
Query: 121 aggctaagggtctgcatgacctaggagacgtggttaccctgaccctttttgtattggagt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aggctaagggtctgcatgacctaggagacgtggttaccctgaccctttttgtattggagt 180
Query: 181 gaagggagctcgatggtcttt 201
|||||||||||||||||||||
Sbjct: 181 gaagggagctcgatggtcttt 201
>51606_ptc-miR159e:pmrd
Length = 192
Score = 71.9 bits (36), Expect = 2e-13
Identities = 66/76 (86%)
Strand = Plus / Plus
Query: 116 tgcgcaggctaagggtctgcatgacctaggagacgtggttaccctgaccctttttgtatt 175
||||||||||||||||||||||| |||||||| |||||| || ||| | |||| || ||
Sbjct: 106 tgcgcaggctaagggtctgcatgtgctaggagatgtggttgccttgatctttttggtctt 165
Query: 176 ggagtgaagggagctc 191
|| |||||||||||||
Sbjct: 166 ggggtgaagggagctc 181
>48541_gma-miR159c:pmrd
Length = 185
Score = 46.1 bits (23), Expect = 1e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 165 ctttttgtattggagtgaagggagctc 191
||||| |||||||||||||||||||||
Sbjct: 146 cttttagtattggagtgaagggagctc 172
>48540_gma-miR159b:pmrd
Length = 186
Score = 46.1 bits (23), Expect = 1e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 165 ctttttgtattggagtgaagggagctc 191
||||| |||||||||||||||||||||
Sbjct: 148 cttttggtattggagtgaagggagctc 174
>54775_vvi-miR159a:pmrd
Length = 194
Score = 40.1 bits (20), Expect = 6e-04
Identities = 53/64 (82%)
Strand = Plus / Plus
Query: 128 gggtctgcatgacctaggagacgtggttaccctgaccctttttgtattggagtgaaggga 187
|||| |||||||||| ||||| |||||| || ||| | || | | ||||||||||||||
Sbjct: 119 gggtgtgcatgacctcggagaagtggttgccttgatctttctggccttggagtgaaggga 178
Query: 188 gctc 191
||||
Sbjct: 179 gctc 182
