miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;AARH01006065.1/463210-463415 3694:Populus
           trichocarpa
          Length = 206

 Score =  398 bits (201), Expect = e-110
 Identities = 201/201 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaggctcaatggagctctccccactccatgcctgaaaggagttcgatggtagaccatggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2   gaggctcaatggagctctccccactccatgcctgaaaggagttcgatggtagaccatggc 61

                                                                       
Query: 61  tgctagttcatgaatacccttgggtgcgcagaattagcaacggtgcaggcgaagttgcgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62  tgctagttcatgaatacccttgggtgcgcagaattagcaacggtgcaggcgaagttgcgc 121

                                                                       
Query: 121 aggctaagggtctgcatgacctaggagacgtggttaccctgaccctttttgtattggagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 aggctaagggtctgcatgacctaggagacgtggttaccctgaccctttttgtattggagt 181

                                
Query: 181 gaagggagctcgatggtcttt 201
           |||||||||||||||||||||
Sbjct: 182 gaagggagctcgatggtcttt 202




>RF00638;MIR159;AASG02000051.1/79825-80023 3988:Ricinus communis
           (castor bean)
          Length = 199

 Score = 89.7 bits (45), Expect = 1e-17
 Identities = 69/77 (89%)
 Strand = Plus / Plus

                                                                       
Query: 115 ttgcgcaggctaagggtctgcatgacctaggagacgtggttaccctgaccctttttgtat 174
           ||||||||||||||||| |||||||||| ||||||||||||||| |   | ||||| |||
Sbjct: 109 ttgcgcaggctaagggtttgcatgacctgggagacgtggttaccttcttcttttttatat 168

                            
Query: 175 tggagtgaagggagctc 191
           |||||||||||||||||
Sbjct: 169 tggagtgaagggagctc 185




>RF00638;MIR159;ABIM01022236.1/33140-32940 3649:Carica papaya
           (papaya)
          Length = 201

 Score = 77.8 bits (39), Expect = 5e-14
 Identities = 119/146 (81%), Gaps = 6/146 (4%)
 Strand = Plus / Plus

                                                                       
Query: 51  agaccatggctgctagttcatgaatacccttgggtgcgcagaattagcaacggtgcaggc 110
           |||||||||||||||||||||||||| || ||| ||||||| || ||| | | ||  || 
Sbjct: 53  agaccatggctgctagttcatgaatatccatggctgcgcaggataagcgatgttggcgg- 111

                                                                       
Query: 111 gaagttgcgcaggctaagggtctgcatgacctaggagacgtggttaccctgacccttttt 170
                |||||||||||||||| ||||||| | ||||||| ||||| |  ||| | |||| 
Sbjct: 112 -----tgcgcaggctaagggtttgcatgagccaggagacatggttcctttgatctttttg 166

                                     
Query: 171 gtattggagtgaagggagctcgatgg 196
           ||||||||||||||||||||| ||||
Sbjct: 167 gtattggagtgaagggagctctatgg 192




>RF00638;MIR159;AARH01006065.1/468133-468327 3694:Populus
           trichocarpa
          Length = 195

 Score = 71.9 bits (36), Expect = 3e-12
 Identities = 66/76 (86%)
 Strand = Plus / Plus

                                                                       
Query: 116 tgcgcaggctaagggtctgcatgacctaggagacgtggttaccctgaccctttttgtatt 175
           |||||||||||||||||||||||  |||||||| |||||| || ||| | |||| || ||
Sbjct: 106 tgcgcaggctaagggtctgcatgtgctaggagatgtggttgccttgatctttttggtctt 165

                           
Query: 176 ggagtgaagggagctc 191
           || |||||||||||||
Sbjct: 166 ggggtgaagggagctc 181




>RF00638;MIR159;AASG02000051.1/86758-86979 3988:Ricinus communis
          (castor bean)
          Length = 222

 Score = 65.9 bits (33), Expect = 2e-10
 Identities = 36/37 (97%)
 Strand = Plus / Plus

                                               
Query: 55 catggctgctagttcatgaatacccttgggtgcgcag 91
          ||||||||||||||||||||||||||| |||||||||
Sbjct: 57 catggctgctagttcatgaataccctttggtgcgcag 93




>RF00638;MIR159;CAAP02000074.1/110075-110270 29760:Vitis vinifera
          Length = 196

 Score = 46.1 bits (23), Expect = 2e-04
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 171 gtattggagtgaagggagctcgatggt 197
           ||||||||||||||||||||| |||||
Sbjct: 162 gtattggagtgaagggagctctatggt 188