miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>51608_ptc-miR160a:pmrd
Length = 102
Score = 202 bits (102), Expect = 4e-53
Identities = 102/102 (100%)
Strand = Plus / Plus
Query: 1 acatgggttatgcctggctccctgtatgccacaagcaaagaccaatcttttgttttagat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 acatgggttatgcctggctccctgtatgccacaagcaaagaccaatcttttgttttagat 60
Query: 61 tggctgttgccggtggcgtgcgaggagccaagcatactctct 102
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tggctgttgccggtggcgtgcgaggagccaagcatactctct 102
>53874_ptc-miRf12052-akr:pmrd
Length = 110
Score = 141 bits (71), Expect = 1e-34
Identities = 96/102 (94%), Gaps = 3/102 (2%)
Strand = Plus / Plus
Query: 3 atgggttatgcctggctccctgtatgccacaagcaaagaccaatctttt--gttttagat 60
||||||||||||||||||||||||||||||| |||||||||||||| || || ||||||
Sbjct: 4 atgggttatgcctggctccctgtatgccaca-gcaaagaccaatctcttctgtcttagat 62
Query: 61 tggctgttgccggtggcgtgcgaggagccaagcatactctct 102
|||||| |||||||||||||||||||||||||||||||||||
Sbjct: 63 tggctgctgccggtggcgtgcgaggagccaagcatactctct 104
>51611_ptc-miR160d:pmrd
Length = 103
Score = 141 bits (71), Expect = 1e-34
Identities = 96/102 (94%), Gaps = 3/102 (2%)
Strand = Plus / Plus
Query: 3 atgggttatgcctggctccctgtatgccacaagcaaagaccaatctttt--gttttagat 60
||||||||||||||||||||||||||||||| |||||||||||||| || || ||||||
Sbjct: 3 atgggttatgcctggctccctgtatgccaca-gcaaagaccaatctcttctgtcttagat 61
Query: 61 tggctgttgccggtggcgtgcgaggagccaagcatactctct 102
|||||| |||||||||||||||||||||||||||||||||||
Sbjct: 62 tggctgctgccggtggcgtgcgaggagccaagcatactctct 103
>54780_vvi-miR160c:pmrd
Length = 106
Score = 56.0 bits (28), Expect = 5e-09
Identities = 81/96 (84%), Gaps = 2/96 (2%)
Strand = Plus / Plus
Query: 3 atgggttatgcctggctccctgtatgccacaagcaaagaccaatcttttgttttagattg 62
||||||| ||||||||||||||||||||||| | | |||||| || || | |||||
Sbjct: 3 atgggttgtgcctggctccctgtatgccacacgtagagaccactccctt-tcccggattg 61
Query: 63 gct-gttgccggtggcgtgcgaggagccaagcatac 97
||| |||| ||||||||||||||||||||||||||
Sbjct: 62 gctatttgcgggtggcgtgcgaggagccaagcatac 97
>54675_tae-miR160:pmrd
Length = 148
Score = 52.0 bits (26), Expect = 8e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 3 atgggttatgcctggctccctgtatgccac 32
||||| ||||||||||||||||||||||||
Sbjct: 14 atgggatatgcctggctccctgtatgccac 43
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 74 tggcgtgcgaggagccaagcat 95
||||||||||||||||||||||
Sbjct: 91 tggcgtgcgaggagccaagcat 112
>48791_oba-miR160:pmrd
Length = 90
Score = 52.0 bits (26), Expect = 8e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 72 ggtggcgtgcgaggagccaagcatac 97
||||||||||||||||||||||||||
Sbjct: 65 ggtggcgtgcgaggagccaagcatac 90
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccac 32
||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccac 25
>46936_ath-miR160c:pmrd
Length = 89
Score = 52.0 bits (26), Expect = 8e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 7 gttatgcctggctccctgtatgccac 32
||||||||||||||||||||||||||
Sbjct: 1 gttatgcctggctccctgtatgccac 26
>48658_hvv-miR160a:pmrd
Length = 344
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 3 atgggttatgcctggctccctgtatgcca 31
||||| |||||||||||||||||||||||
Sbjct: 316 atgggatatgcctggctccctgtatgcca 344
>47338_ath-miRf10238-akr:pmrd
Length = 89
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccacaag 35
|||||||||||||||||||||||||
Sbjct: 5 tgcctggctccctgtatgccacaag 29
>46935_ath-miR160b:pmrd
Length = 89
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccacaag 35
|||||||||||||||||||||||||
Sbjct: 5 tgcctggctccctgtatgccacaag 29
>54942_zma-miR160e:pmrd
Length = 94
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 9 tatgcctggctccctgtatgccac 32
||||||||||||||||||||||||
Sbjct: 7 tatgcctggctccctgtatgccac 30
>54941_zma-miR160d:pmrd
Length = 142
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 9 tatgcctggctccctgtatgccac 32
||||||||||||||||||||||||
Sbjct: 19 tatgcctggctccctgtatgccac 42
>48829_osa-miR160d:pmrd
Length = 142
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 9 tatgcctggctccctgtatgccac 32
||||||||||||||||||||||||
Sbjct: 6 tatgcctggctccctgtatgccac 29
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 74 tggcgtgcgaggagccaagcat 95
||||||||||||||||||||||
Sbjct: 117 tggcgtgcgaggagccaagcat 138
>54947_zma-miR160m:pmrd
Length = 81
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccaca 33
|||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccaca 23
>54946_zma-miR160i:pmrd
Length = 81
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 atgcctggctccctgtatgccac 32
|||||||||||||||||||||||
Sbjct: 1 atgcctggctccctgtatgccac 23
>54945_zma-miR160h:pmrd
Length = 86
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccaca 33
|||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccaca 23
>54944_zma-miR160g:pmrd
Length = 86
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccaca 33
|||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccaca 23
>54939_zma-miR160b:pmrd
Length = 121
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccaca 33
|||||||||||||||||||||||
Sbjct: 21 tgcctggctccctgtatgccaca 43
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 72 ggtggcgtgcgaggagccaagcat 95
|||||||||| |||||||||||||
Sbjct: 79 ggtggcgtgcaaggagccaagcat 102
>54938_zma-miR160a:pmrd
Length = 104
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccaca 33
|||||||||||||||||||||||
Sbjct: 10 tgcctggctccctgtatgccaca 32
>54783_vvi-miR160f:pmrd
Length = 102
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 tatgcctggctccctgtatgcca 31
|||||||||||||||||||||||
Sbjct: 9 tatgcctggctccctgtatgcca 31
>54541_sly-miR160a:pmrd
Length = 129
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 tatgcctggctccctgtatgcca 31
|||||||||||||||||||||||
Sbjct: 18 tatgcctggctccctgtatgcca 40
>54405_sbi-miR160b:pmrd
Length = 82
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccaca 33
|||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccaca 23
>54404_sbi-miR160a:pmrd
Length = 84
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccaca 33
|||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccaca 23
>51334_pga-miR160:pmrd
Length = 80
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccaca 33
|||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccaca 23
>48826_osa-miR160a:pmrd
Length = 88
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccaca 33
|||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccaca 26
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 72 ggtggcgtgcgaggagccaagcat 95
|||||||||| |||||||||||||
Sbjct: 63 ggtggcgtgcaaggagccaagcat 86
>48397_bra-miR160a:pmrd
Length = 127
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 tatgcctggctccctgtatgcca 31
|||||||||||||||||||||||
Sbjct: 24 tatgcctggctccctgtatgcca 46
>48396_bra-miR160a:pmrd
Length = 127
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 tatgcctggctccctgtatgcca 31
|||||||||||||||||||||||
Sbjct: 24 tatgcctggctccctgtatgcca 46
>47213_ath-miRf10113-akr:pmrd
Length = 85
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 tatgcctggctccctgtatgcca 31
|||||||||||||||||||||||
Sbjct: 2 tatgcctggctccctgtatgcca 24
>46934_ath-miR160a:pmrd
Length = 85
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 tatgcctggctccctgtatgcca 31
|||||||||||||||||||||||
Sbjct: 2 tatgcctggctccctgtatgcca 24
>54943_zma-miR160f:pmrd
Length = 116
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 tatgcctggctccctgtatgcc 30
||||||||||||||||||||||
Sbjct: 19 tatgcctggctccctgtatgcc 40
>54940_zma-miR160c:pmrd
Length = 100
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccac 32
||||||||||||||||||||||
Sbjct: 7 tgcctggctccctgtatgccac 28
>54781_vvi-miR160d:pmrd
Length = 102
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 atgcctggctccctgtatgcca 31
||||||||||||||||||||||
Sbjct: 10 atgcctggctccctgtatgcca 31
>54759_ttu-miR160a:pmrd
Length = 87
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccac 32
||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccac 22
>54575_smo-miR160b:pmrd
Length = 108
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccac 32
||||||||||||||||||||||
Sbjct: 13 tgcctggctccctgtatgccac 34
>54408_sbi-miR160e:pmrd
Length = 95
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccac 32
||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccac 22
>54407_sbi-miR160d:pmrd
Length = 100
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccac 32
||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccac 22
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 74 tggcgtgcgaggagccaagca 94
|||||||||||||||||||||
Sbjct: 80 tggcgtgcgaggagccaagca 100
>54406_sbi-miR160c:pmrd
Length = 83
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccac 32
||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccac 22
>51364_ppt-miR160f:pmrd
Length = 138
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccac 32
||||||||||||||||||||||
Sbjct: 30 tgcctggctccctgtatgccac 51
>51363_ppt-miR160e:pmrd
Length = 138
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccac 32
||||||||||||||||||||||
Sbjct: 30 tgcctggctccctgtatgccac 51
>51359_ppt-miR160a:pmrd
Length = 99
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccac 32
||||||||||||||||||||||
Sbjct: 11 tgcctggctccctgtatgccac 32
>48833_osa-miR160n:pmrd
Length = 131
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccac 32
||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccac 22
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 74 tggcgtgcgaggagccaagcat 95
||||||||||||||||||||||
Sbjct: 110 tggcgtgcgaggagccaagcat 131
>48832_osa-miR160m:pmrd
Length = 82
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccac 32
||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccac 22
>48830_osa-miR160e:pmrd
Length = 114
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 tatgcctggctccctgtatgcc 30
||||||||||||||||||||||
Sbjct: 9 tatgcctggctccctgtatgcc 30
>48828_osa-miR160c:pmrd
Length = 99
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccac 32
||||||||||||||||||||||
Sbjct: 7 tgcctggctccctgtatgccac 28
>48827_osa-miR160b:pmrd
Length = 139
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccac 32
||||||||||||||||||||||
Sbjct: 30 tgcctggctccctgtatgccac 51
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 72 ggtggcgtgcgaggagccaagcat 95
|||||||||| |||||||||||||
Sbjct: 89 ggtggcgtgcaaggagccaagcat 112
>54574_smo-miR160a:pmrd
Length = 106
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgcca 31
|||||||||||||||||||||
Sbjct: 11 tgcctggctccctgtatgcca 31
>51610_ptc-miR160c:pmrd
Length = 98
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgcca 31
|||||||||||||||||||||
Sbjct: 11 tgcctggctccctgtatgcca 31
>51609_ptc-miR160b:pmrd
Length = 98
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgcca 31
|||||||||||||||||||||
Sbjct: 11 tgcctggctccctgtatgcca 31
>51367_ppt-miR160i:pmrd
Length = 139
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 12 gcctggctccctgtatgccac 32
|||||||||||||||||||||
Sbjct: 31 gcctggctccctgtatgccac 51
>48704_mtr-miR160e:pmrd
Length = 91
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgcca 31
|||||||||||||||||||||
Sbjct: 6 tgcctggctccctgtatgcca 26
>48703_mtr-miR160d:pmrd
Length = 91
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgcca 31
|||||||||||||||||||||
Sbjct: 6 tgcctggctccctgtatgcca 26
>48702_mtr-miR160b:pmrd
Length = 91
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgcca 31
|||||||||||||||||||||
Sbjct: 6 tgcctggctccctgtatgcca 26
>48635_gra-miR160b:pmrd
Length = 293
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 10 atgcctggctccctgtatgcc 30
|||||||||||||||||||||
Sbjct: 272 atgcctggctccctgtatgcc 292
>48634_gra-miR160a:pmrd
Length = 106
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 10 atgcctggctccctgtatgcc 30
|||||||||||||||||||||
Sbjct: 85 atgcctggctccctgtatgcc 105
>48542_gma-miR160a:pmrd
Length = 119
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgcca 31
|||||||||||||||||||||
Sbjct: 21 tgcctggctccctgtatgcca 41
>48306_bdi-miR160:pmrd
Length = 120
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 10 atgcctggctccctgtatgcc 30
|||||||||||||||||||||
Sbjct: 17 atgcctggctccctgtatgcc 37
>46865_aqc-miR160b:pmrd
Length = 82
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgcca 31
|||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgcca 21
