miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>51610_ptc-miR160c:pmrd
Length = 98
Score = 194 bits (98), Expect = 8e-51
Identities = 98/98 (100%)
Strand = Plus / Plus
Query: 1 atattatatgtgcctggctccctgtatgccatttgcagagcccaccggttcttcgatggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atattatatgtgcctggctccctgtatgccatttgcagagcccaccggttcttcgatggc 60
Query: 61 ctccgtggatggcgtatgaggagccatgcatattcaca 98
||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ctccgtggatggcgtatgaggagccatgcatattcaca 98
>51609_ptc-miR160b:pmrd
Length = 98
Score = 165 bits (83), Expect = 7e-42
Identities = 92/95 (96%)
Strand = Plus / Plus
Query: 1 atattatatgtgcctggctccctgtatgccatttgcagagcccaccggttcttcgatggc 60
|||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||||
Sbjct: 1 atattatatgtgcctggctccctgtatgccatttgcagagcccaacggatcctcgatggc 60
Query: 61 ctccgtggatggcgtatgaggagccatgcatattc 95
|||||||||||||||||||||||||||||||||||
Sbjct: 61 ctccgtggatggcgtatgaggagccatgcatattc 95
>54783_vvi-miR160f:pmrd
Length = 102
Score = 135 bits (68), Expect = 7e-33
Identities = 83/88 (94%)
Strand = Plus / Plus
Query: 6 atatgtgcctggctccctgtatgccatttgcagagcccaccggttcttcgatggcctccg 65
|||| |||||||||||||||||||||||||||||||||||||| | |||||||||| ||
Sbjct: 6 atatatgcctggctccctgtatgccatttgcagagcccaccggcacatcgatggccttcg 65
Query: 66 tggatggcgtatgaggagccatgcatat 93
||||||||||||||||||||||||||||
Sbjct: 66 tggatggcgtatgaggagccatgcatat 93
>47213_ath-miRf10113-akr:pmrd
Length = 85
Score = 93.7 bits (47), Expect = 2e-20
Identities = 75/83 (90%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccatttgcagagcccaccggttcttcgatggcctccgtggat 70
|||||||||||||||||||||| ||| ||||||| || | |||||| |||||||||||
Sbjct: 4 tgcctggctccctgtatgccatatgctgagcccatcgagt-atcgatgacctccgtggat 62
Query: 71 ggcgtatgaggagccatgcatat 93
|||||||||||||||||||||||
Sbjct: 63 ggcgtatgaggagccatgcatat 85
>46934_ath-miR160a:pmrd
Length = 85
Score = 93.7 bits (47), Expect = 2e-20
Identities = 75/83 (90%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccatttgcagagcccaccggttcttcgatggcctccgtggat 70
|||||||||||||||||||||| ||| ||||||| || | |||||| |||||||||||
Sbjct: 4 tgcctggctccctgtatgccatatgctgagcccatcgagt-atcgatgacctccgtggat 62
Query: 71 ggcgtatgaggagccatgcatat 93
|||||||||||||||||||||||
Sbjct: 63 ggcgtatgaggagccatgcatat 85
>48542_gma-miR160a:pmrd
Length = 119
Score = 79.8 bits (40), Expect = 3e-16
Identities = 76/88 (86%)
Strand = Plus / Plus
Query: 7 tatgtgcctggctccctgtatgccatttgcagagcccaccggttcttcgatggcctccgt 66
||||||||||||||||||||||||||||| ||||| || || | || ||| ||| ||
Sbjct: 17 tatgtgcctggctccctgtatgccatttgtagagctcatcgaagcatcaatgacctttgt 76
Query: 67 ggatggcgtatgaggagccatgcatatt 94
|||||||||||||||||||| |||||||
Sbjct: 77 ggatggcgtatgaggagccaagcatatt 104
>48397_bra-miR160a:pmrd
Length = 127
Score = 63.9 bits (32), Expect = 2e-11
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 55 gatggcctccgtggatggcgtatgaggagccatgcatatt 94
|||| |||||||| ||||||||||||||||||||||||||
Sbjct: 69 gatgacctccgtgaatggcgtatgaggagccatgcatatt 108
>48396_bra-miR160a:pmrd
Length = 127
Score = 63.9 bits (32), Expect = 2e-11
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 55 gatggcctccgtggatggcgtatgaggagccatgcatatt 94
|||| |||||||| ||||||||||||||||||||||||||
Sbjct: 69 gatgacctccgtgaatggcgtatgaggagccatgcatatt 108
>54541_sly-miR160a:pmrd
Length = 129
Score = 58.0 bits (29), Expect = 1e-09
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccatttgcagagcccaccg 47
||||||||||||||||||||||||||| ||| |||||
Sbjct: 20 tgcctggctccctgtatgccatttgcaaagctcaccg 56
>54781_vvi-miR160d:pmrd
Length = 102
Score = 56.0 bits (28), Expect = 5e-09
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccatttgcagagcccacc 46
||||||||||||||||||||||||||| || |||||
Sbjct: 11 tgcctggctccctgtatgccatttgcaaagtccacc 46
>48703_mtr-miR160d:pmrd
Length = 91
Score = 56.0 bits (28), Expect = 5e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 9 tgtgcctggctccctgtatgccatttgcagag 40
||||||||||||||||||||||||||| ||||
Sbjct: 4 tgtgcctggctccctgtatgccatttgtagag 35
>48704_mtr-miR160e:pmrd
Length = 91
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 65 gtggatggcgtatgaggagccatgcatattc 95
|||||||||||||||||||||| ||||||||
Sbjct: 60 gtggatggcgtatgaggagccaagcatattc 90
Score = 52.0 bits (26), Expect = 8e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 7 tatgtgcctggctccctgtatgccat 32
||||||||||||||||||||||||||
Sbjct: 2 tatgtgcctggctccctgtatgccat 27
>48702_mtr-miR160b:pmrd
Length = 91
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 65 gtggatggcgtatgaggagccatgcatattc 95
|||||||||||||||||||||| ||||||||
Sbjct: 60 gtggatggcgtatgaggagccaagcatattc 90
Score = 52.0 bits (26), Expect = 8e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 7 tatgtgcctggctccctgtatgccat 32
||||||||||||||||||||||||||
Sbjct: 2 tatgtgcctggctccctgtatgccat 27
>46865_aqc-miR160b:pmrd
Length = 82
Score = 52.0 bits (26), Expect = 8e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccatttgc 36
||||||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccatttgc 26
>51615_ptc-miR160h:pmrd
Length = 98
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 9 tgtgcctggctccctgtatgccatttgca 37
|||||||||||||||| ||||||||||||
Sbjct: 9 tgtgcctggctccctgcatgccatttgca 37
>54940_zma-miR160c:pmrd
Length = 100
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 8 atgtgcctggctccctgtatgcca 31
||||||||||||||||||||||||
Sbjct: 4 atgtgcctggctccctgtatgcca 27
>48828_osa-miR160c:pmrd
Length = 99
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 8 atgtgcctggctccctgtatgcca 31
||||||||||||||||||||||||
Sbjct: 4 atgtgcctggctccctgtatgcca 27
>54939_zma-miR160b:pmrd
Length = 121
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 tgtgcctggctccctgtatgcca 31
|||||||||||||||||||||||
Sbjct: 19 tgtgcctggctccctgtatgcca 41
>54780_vvi-miR160c:pmrd
Length = 106
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 tgtgcctggctccctgtatgcca 31
|||||||||||||||||||||||
Sbjct: 9 tgtgcctggctccctgtatgcca 31
>48826_osa-miR160a:pmrd
Length = 88
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 tgtgcctggctccctgtatgcca 31
|||||||||||||||||||||||
Sbjct: 2 tgtgcctggctccctgtatgcca 24
>48791_oba-miR160:pmrd
Length = 90
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 tgtgcctggctccctgtatgcca 31
|||||||||||||||||||||||
Sbjct: 2 tgtgcctggctccctgtatgcca 24
>54938_zma-miR160a:pmrd
Length = 104
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 gtgcctggctccctgtatgcca 31
||||||||||||||||||||||
Sbjct: 9 gtgcctggctccctgtatgcca 30
>54574_smo-miR160a:pmrd
Length = 106
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccat 32
||||||||||||||||||||||
Sbjct: 11 tgcctggctccctgtatgccat 32
>51363_ppt-miR160e:pmrd
Length = 138
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccatttgc 36
||||||||||||||||||||| ||||
Sbjct: 30 tgcctggctccctgtatgccacttgc 55
>48827_osa-miR160b:pmrd
Length = 139
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 gtgcctggctccctgtatgcca 31
||||||||||||||||||||||
Sbjct: 29 gtgcctggctccctgtatgcca 50
>47338_ath-miRf10238-akr:pmrd
Length = 89
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 gtgcctggctccctgtatgcca 31
||||||||||||||||||||||
Sbjct: 4 gtgcctggctccctgtatgcca 25
>46935_ath-miR160b:pmrd
Length = 89
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 gtgcctggctccctgtatgcca 31
||||||||||||||||||||||
Sbjct: 4 gtgcctggctccctgtatgcca 25
>54947_zma-miR160m:pmrd
Length = 81
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgcca 31
|||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgcca 21
>54946_zma-miR160i:pmrd
Length = 81
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgcca 31
|||||||||||||||||||||
Sbjct: 2 tgcctggctccctgtatgcca 22
>54945_zma-miR160h:pmrd
Length = 86
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgcca 31
|||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgcca 21
>54944_zma-miR160g:pmrd
Length = 86
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgcca 31
|||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgcca 21
>54942_zma-miR160e:pmrd
Length = 94
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgcca 31
|||||||||||||||||||||
Sbjct: 9 tgcctggctccctgtatgcca 29
>54941_zma-miR160d:pmrd
Length = 142
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgcca 31
|||||||||||||||||||||
Sbjct: 21 tgcctggctccctgtatgcca 41
>54759_ttu-miR160a:pmrd
Length = 87
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgcca 31
|||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgcca 21
>54675_tae-miR160:pmrd
Length = 148
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgcca 31
|||||||||||||||||||||
Sbjct: 22 tgcctggctccctgtatgcca 42
>54575_smo-miR160b:pmrd
Length = 108
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgcca 31
|||||||||||||||||||||
Sbjct: 13 tgcctggctccctgtatgcca 33
>54408_sbi-miR160e:pmrd
Length = 95
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgcca 31
|||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgcca 21
>54407_sbi-miR160d:pmrd
Length = 100
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgcca 31
|||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgcca 21
>54406_sbi-miR160c:pmrd
Length = 83
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgcca 31
|||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgcca 21
>54405_sbi-miR160b:pmrd
Length = 82
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgcca 31
|||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgcca 21
>54404_sbi-miR160a:pmrd
Length = 84
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgcca 31
|||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgcca 21
>53874_ptc-miRf12052-akr:pmrd
Length = 110
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgcca 31
|||||||||||||||||||||
Sbjct: 12 tgcctggctccctgtatgcca 32
>51611_ptc-miR160d:pmrd
Length = 103
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgcca 31
|||||||||||||||||||||
Sbjct: 11 tgcctggctccctgtatgcca 31
>51608_ptc-miR160a:pmrd
Length = 102
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgcca 31
|||||||||||||||||||||
Sbjct: 11 tgcctggctccctgtatgcca 31
>51364_ppt-miR160f:pmrd
Length = 138
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgcca 31
|||||||||||||||||||||
Sbjct: 30 tgcctggctccctgtatgcca 50
>51359_ppt-miR160a:pmrd
Length = 99
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgcca 31
|||||||||||||||||||||
Sbjct: 11 tgcctggctccctgtatgcca 31
>51334_pga-miR160:pmrd
Length = 80
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgcca 31
|||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgcca 21
>48833_osa-miR160n:pmrd
Length = 131
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgcca 31
|||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgcca 21
>48832_osa-miR160m:pmrd
Length = 82
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgcca 31
|||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgcca 21
>48829_osa-miR160d:pmrd
Length = 142
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgcca 31
|||||||||||||||||||||
Sbjct: 8 tgcctggctccctgtatgcca 28
>48658_hvv-miR160a:pmrd
Length = 344
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgcca 31
|||||||||||||||||||||
Sbjct: 324 tgcctggctccctgtatgcca 344
>46936_ath-miR160c:pmrd
Length = 89
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgcca 31
|||||||||||||||||||||
Sbjct: 5 tgcctggctccctgtatgcca 25
>54943_zma-miR160f:pmrd
Length = 116
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgcc 30
||||||||||||||||||||
Sbjct: 21 tgcctggctccctgtatgcc 40
>54760_ttu-miR160b:pmrd
Length = 218
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgcc 30
||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgcc 20
>54528_sce-miR160:pmrd
Length = 180
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgcc 30
||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgcc 20
>51367_ppt-miR160i:pmrd
Length = 139
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 gcctggctccctgtatgcca 31
||||||||||||||||||||
Sbjct: 31 gcctggctccctgtatgcca 50
>51360_ppt-miR160b:pmrd
Length = 103
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 gcctggctccctgtatgcca 31
||||||||||||||||||||
Sbjct: 12 gcctggctccctgtatgcca 31
>48830_osa-miR160e:pmrd
Length = 114
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgcc 30
||||||||||||||||||||
Sbjct: 11 tgcctggctccctgtatgcc 30
>48659_hvv-miR160b:pmrd
Length = 47
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgcc 30
||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgcc 20
>48635_gra-miR160b:pmrd
Length = 293
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgcc 30
||||||||||||||||||||
Sbjct: 273 tgcctggctccctgtatgcc 292
>48634_gra-miR160a:pmrd
Length = 106
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgcc 30
||||||||||||||||||||
Sbjct: 86 tgcctggctccctgtatgcc 105
>48544_gma-miR160o:pmrd
Length = 503
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgcc 30
||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgcc 20
>48543_gma-miR160n:pmrd
Length = 107
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgcc 30
||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgcc 20
>48306_bdi-miR160:pmrd
Length = 120
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgcc 30
||||||||||||||||||||
Sbjct: 18 tgcctggctccctgtatgcc 37
