miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00247;mir-160;AARH01003540.1/65975-65890 3694:Populus
trichocarpa
Length = 86
Score = 147 bits (74), Expect = 3e-35
Identities = 83/86 (96%)
Strand = Plus / Plus
Query: 8 atgtgcctggctccctgtatgccatttgcagagcccaccggttcttcgatggcctccgtg 67
||||||||||||||||||||||||||||||||||||| ||| || |||||||||||||||
Sbjct: 1 atgtgcctggctccctgtatgccatttgcagagcccaacggatcctcgatggcctccgtg 60
Query: 68 gatggcgtatgaggagccatgcatat 93
||||||||||||||||||||||||||
Sbjct: 61 gatggcgtatgaggagccatgcatat 86
>RF00247;mir-160;CAAP02000343.1/40092-40007 29760:Vitis vinifera
Length = 86
Score = 133 bits (67), Expect = 5e-31
Identities = 79/83 (95%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccatttgcagagcccaccggttcttcgatggcctccgtggat 70
|||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||
Sbjct: 4 tgcctggctccctgtatgccatttgcagagcccaccggcacatcgatggccttcgtggat 63
Query: 71 ggcgtatgaggagccatgcatat 93
|||||||||||||||||||||||
Sbjct: 64 ggcgtatgaggagccatgcatat 86
>RF00247;mir-160;ABIM01012188.1/1387-1471 3649:Carica papaya
(papaya)
Length = 85
Score = 119 bits (60), Expect = 7e-27
Identities = 79/84 (94%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 9 tgtgcctggctccctgtatgccatttgcagagcccaccggttcttcgatggcctccgtgg 68
|||||||||||||||||||||||||||||||||||||| | | ||| ||||||||||||
Sbjct: 2 tgtgcctggctccctgtatgccatttgcagagcccacc-gagcatcgctggcctccgtgg 60
Query: 69 atggcgtatgaggagccatgcata 92
||||||||||||||||||||||||
Sbjct: 61 atggcgtatgaggagccatgcata 84
>RF00247;mir-160;EU548617.1/275-359 3702:Arabidopsis thaliana
(thale cress)
Length = 85
Score = 93.7 bits (47), Expect = 4e-19
Identities = 75/83 (90%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccatttgcagagcccaccggttcttcgatggcctccgtggat 70
|||||||||||||||||||||| ||| ||||||| || | |||||| |||||||||||
Sbjct: 4 tgcctggctccctgtatgccatatgctgagcccatcgagt-atcgatgacctccgtggat 62
Query: 71 ggcgtatgaggagccatgcatat 93
|||||||||||||||||||||||
Sbjct: 63 ggcgtatgaggagccatgcatat 85
>RF00247;mir-160;BABK01026793.1/1193-1108 34305:Lotus japonicus
Length = 86
Score = 67.9 bits (34), Expect = 2e-11
Identities = 73/86 (84%)
Strand = Plus / Plus
Query: 8 atgtgcctggctccctgtatgccatttgcagagcccaccggttcttcgatggcctccgtg 67
|||||||||||||||||||||||||||| ||||| || || | || ||| ||| ||
Sbjct: 1 atgtgcctggctccctgtatgccatttggagagctcatcgaaacatcaatgatctctttg 60
Query: 68 gatggcgtatgaggagccatgcatat 93
||||||||||||||||||| ||||||
Sbjct: 61 gatggcgtatgaggagccaagcatat 86
>RF00247;mir-160;AC196190.2/61996-61908 4081:Solanum lycopersicum
Length = 89
Score = 58.0 bits (29), Expect = 2e-08
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccatttgcagagcccaccg 47
||||||||||||||||||||||||||| ||| |||||
Sbjct: 4 tgcctggctccctgtatgccatttgcaaagctcaccg 40
>RF00247;mir-160;AC148995.2/105120-105205 3880:Medicago truncatula
(barrel medic)
Length = 86
Score = 56.0 bits (28), Expect = 9e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 9 tgtgcctggctccctgtatgccatttgcagag 40
||||||||||||||||||||||||||| ||||
Sbjct: 2 tgtgcctggctccctgtatgccatttgtagag 33
>RF00247;mir-160;CAAP02000723.1/67959-67874 29760:Vitis vinifera
Length = 86
Score = 56.0 bits (28), Expect = 9e-08
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccatttgcagagcccacc 46
||||||||||||||||||||||||||| || |||||
Sbjct: 4 tgcctggctccctgtatgccatttgcaaagtccacc 39
>RF00247;mir-160;AASG02001090.1/34048-34133 3988:Ricinus communis
(castor bean)
Length = 86
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 9 tgtgcctggctccctgtatgccatttg 35
|||||||||||||||||||||||||||
Sbjct: 2 tgtgcctggctccctgtatgccatttg 28
>RF00247;mir-160;AY728427.1/2-87 3694:Populus trichocarpa
Length = 86
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 9 tgtgcctggctccctgtatgccatttgca 37
|||||||||||||||| ||||||||||||
Sbjct: 2 tgtgcctggctccctgcatgccatttgca 30
>RF00247;mir-160;AC126015.41/7942-7857 3880:Medicago truncatula
(barrel medic)
Length = 86
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 8 atgtgcctggctccctgtatgccat 32
|||||||||||||||||||||||||
Sbjct: 1 atgtgcctggctccctgtatgccat 25
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 65 gtggatggcgtatgaggagccatgcatat 93
|||||||||||||||||||||| ||||||
Sbjct: 58 gtggatggcgtatgaggagccaagcatat 86
>RF00247;mir-160;ABXC01004530.1/55208-55296 4558:Sorghum bicolor
(sorghum)
Length = 89
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 8 atgtgcctggctccctgtatgcca 31
||||||||||||||||||||||||
Sbjct: 1 atgtgcctggctccctgtatgcca 24
>RF00247;mir-160;EU798771.1/193-98 58934:Zizania latifolia
Length = 96
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 8 atgtgcctggctccctgtatgcca 31
||||||||||||||||||||||||
Sbjct: 1 atgtgcctggctccctgtatgcca 24
>RF00247;mir-160;AAAA02022910.1/14752-14660 39946:Oryza sativa
Indica Group
Length = 93
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 8 atgtgcctggctccctgtatgcca 31
||||||||||||||||||||||||
Sbjct: 1 atgtgcctggctccctgtatgcca 24
>RF00247;mir-160;ABIM01017407.1/6156-6071 3649:Carica papaya
(papaya)
Length = 86
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccatttgca 37
|||||||||||||||||||||| ||||
Sbjct: 4 tgcctggctccctgtatgccatctgca 30
>RF00247;mir-160;CAAP02006197.1/486-575 29760:Vitis vinifera
Length = 90
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 tgtgcctggctccctgtatgcca 31
|||||||||||||||||||||||
Sbjct: 2 tgtgcctggctccctgtatgcca 24
>RF00247;mir-160;FM878703.1/301-387 213592:Musa acuminata subsp.
burmannicoides
Length = 87
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 tgtgcctggctccctgtatgcca 31
|||||||||||||||||||||||
Sbjct: 2 tgtgcctggctccctgtatgcca 24
>RF00247;mir-160;EU975926.1/304-390 4577:Zea mays
Length = 87
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 tgtgcctggctccctgtatgcca 31
|||||||||||||||||||||||
Sbjct: 2 tgtgcctggctccctgtatgcca 24
>RF00247;mir-160;ABXC01002436.1/220577-220488 4558:Sorghum bicolor
(sorghum)
Length = 90
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 tgtgcctggctccctgtatgcca 31
|||||||||||||||||||||||
Sbjct: 2 tgtgcctggctccctgtatgcca 24
>RF00247;mir-160;AAAA02005231.1/55127-55040 39946:Oryza sativa
Indica Group
Length = 88
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 tgtgcctggctccctgtatgcca 31
|||||||||||||||||||||||
Sbjct: 2 tgtgcctggctccctgtatgcca 24
>RF00247;mir-160;DQ455766.1/101-12 169985:Oenocarpus bataua
Length = 90
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 tgtgcctggctccctgtatgcca 31
|||||||||||||||||||||||
Sbjct: 2 tgtgcctggctccctgtatgcca 24
>RF00247;mir-160;Z97344.2/54320-54406 3702:Arabidopsis thaliana
(thale cress)
Length = 87
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 gtgcctggctccctgtatgcca 31
||||||||||||||||||||||
Sbjct: 3 gtgcctggctccctgtatgcca 24
>RF00247;mir-160;EU974767.1/328-419 4577:Zea mays
Length = 92
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 gtgcctggctccctgtatgcca 31
||||||||||||||||||||||
Sbjct: 3 gtgcctggctccctgtatgcca 24
>RF00247;mir-160;AAAA02020747.1/14884-14971 39946:Oryza sativa
Indica Group
Length = 88
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 gtgcctggctccctgtatgcca 31
||||||||||||||||||||||
Sbjct: 3 gtgcctggctccctgtatgcca 24
>RF00247;mir-160;ABEU01014597.1/43590-43504 145481:Physcomitrella
patens subsp. patens
Length = 87
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccatttgc 36
||||||||||||||||||||| ||||
Sbjct: 4 tgcctggctccctgtatgccacttgc 29
