miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>51615_ptc-miR160h:pmrd
Length = 98
Score = 194 bits (98), Expect = 8e-51
Identities = 98/98 (100%)
Strand = Plus / Plus
Query: 1 gatccctgtgtgcctggctccctgcatgccatttgcatagctcatcagaacgtcggtggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gatccctgtgtgcctggctccctgcatgccatttgcatagctcatcagaacgtcggtggc 60
Query: 61 cttggtggatggcgtgcaacgagtcatgcatgctgtga 98
||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cttggtggatggcgtgcaacgagtcatgcatgctgtga 98
>54783_vvi-miR160f:pmrd
Length = 102
Score = 58.0 bits (29), Expect = 1e-09
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgcatgccatttgcatagctcatcagaacgtcggtggccttggtggat 70
|||||||||||||| |||||||||||| ||| || | | || ||| ||||||| ||||||
Sbjct: 11 tgcctggctccctgtatgccatttgcagagcccaccggcacatcgatggccttcgtggat 70
Query: 71 ggcgt 75
|||||
Sbjct: 71 ggcgt 75
>51609_ptc-miR160b:pmrd
Length = 98
Score = 54.0 bits (27), Expect = 2e-08
Identities = 57/67 (85%)
Strand = Plus / Plus
Query: 9 tgtgcctggctccctgcatgccatttgcatagctcatcagaacgtcggtggccttggtgg 68
|||||||||||||||| |||||||||||| ||| || | || | ||| |||||| ||||
Sbjct: 9 tgtgcctggctccctgtatgccatttgcagagcccaacggatcctcgatggcctccgtgg 68
Query: 69 atggcgt 75
|||||||
Sbjct: 69 atggcgt 75
>54541_sly-miR160a:pmrd
Length = 129
Score = 52.0 bits (26), Expect = 8e-08
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgcatgccatttgcatagctca 44
|||||||||||||| |||||||||||| ||||||
Sbjct: 20 tgcctggctccctgtatgccatttgcaaagctca 53
>48542_gma-miR160a:pmrd
Length = 119
Score = 52.0 bits (26), Expect = 8e-08
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 9 tgtgcctggctccctgcatgccatttgcatagctcatc 46
|||||||||||||||| |||||||||| | ||||||||
Sbjct: 19 tgtgcctggctccctgtatgccatttgtagagctcatc 56
>51610_ptc-miR160c:pmrd
Length = 98
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 9 tgtgcctggctccctgcatgccatttgca 37
|||||||||||||||| ||||||||||||
Sbjct: 9 tgtgcctggctccctgtatgccatttgca 37
>48703_mtr-miR160d:pmrd
Length = 91
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 8 gtgtgcctggctccctgcatgccatttg 35
||||||||||||||||| ||||||||||
Sbjct: 3 gtgtgcctggctccctgtatgccatttg 30
>54781_vvi-miR160d:pmrd
Length = 102
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgcatgccatttgca 37
|||||||||||||| ||||||||||||
Sbjct: 11 tgcctggctccctgtatgccatttgca 37
>46865_aqc-miR160b:pmrd
Length = 82
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgcatgccatttgc 36
|||||||||||||| |||||||||||
Sbjct: 1 tgcctggctccctgtatgccatttgc 26
>54939_zma-miR160b:pmrd
Length = 121
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 7 tgtgtgcctggctccctgcatgcca 31
|||||||||||||||||| ||||||
Sbjct: 17 tgtgtgcctggctccctgtatgcca 41
>51361_ppt-miR160c:pmrd
Length = 100
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 12 gcctggctccctgcatgccatttgc 36
|||||||||||||||||||| ||||
Sbjct: 12 gcctggctccctgcatgccacttgc 36
>48826_osa-miR160a:pmrd
Length = 88
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 8 gtgtgcctggctccctgcatgcca 31
||||||||||||||||| ||||||
Sbjct: 1 gtgtgcctggctccctgtatgcca 24
>48704_mtr-miR160e:pmrd
Length = 91
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 9 tgtgcctggctccctgcatgccat 32
|||||||||||||||| |||||||
Sbjct: 4 tgtgcctggctccctgtatgccat 27
>48702_mtr-miR160b:pmrd
Length = 91
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 9 tgtgcctggctccctgcatgccat 32
|||||||||||||||| |||||||
Sbjct: 4 tgtgcctggctccctgtatgccat 27
