miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>51618_ptc-miR162c:pmrd
Length = 107
Score = 170 bits (86), Expect = 1e-43
Identities = 100/107 (93%)
Strand = Plus / Plus
Query: 1 tgagaagacactggaggcagcggttcatcgatcttttcctgaagannnnnnngttttaca 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 1 tgagaagacactggaggcagcggttcatcgatcttttcctgaagatttttttgttttaca 60
Query: 61 cgaacaacacgaaccgatcgataaacctctgcatccagtgcttccct 107
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cgaacaacacgaaccgatcgataaacctctgcatccagtgcttccct 107
>51617_ptc-miR162b:pmrd
Length = 107
Score = 170 bits (86), Expect = 1e-43
Identities = 100/107 (93%)
Strand = Plus / Plus
Query: 1 tgagaagacactggaggcagcggttcatcgatcttttcctgaagannnnnnngttttaca 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 1 tgagaagacactggaggcagcggttcatcgatcttttcctgaagatttttttgttttaca 60
Query: 61 cgaacaacacgaaccgatcgataaacctctgcatccagtgcttccct 107
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cgaacaacacgaaccgatcgataaacctctgcatccagtgcttccct 107
>52497_ptc-miRf10675-akr:pmrd
Length = 105
Score = 167 bits (84), Expect = 2e-42
Identities = 98/105 (93%)
Strand = Plus / Minus
Query: 2 gagaagacactggaggcagcggttcatcgatcttttcctgaagannnnnnngttttacac 61
|||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 105 gagaagacactggaggcagcggttcatcgatcttttcctgaagatttttttgttttacac 46
Query: 62 gaacaacacgaaccgatcgataaacctctgcatccagtgcttccc 106
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45 gaacaacacgaaccgatcgataaacctctgcatccagtgcttccc 1
>52244_ptc-miRf10422-akr:pmrd
Length = 105
Score = 167 bits (84), Expect = 2e-42
Identities = 98/105 (93%)
Strand = Plus / Minus
Query: 2 gagaagacactggaggcagcggttcatcgatcttttcctgaagannnnnnngttttacac 61
|||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 105 gagaagacactggaggcagcggttcatcgatcttttcctgaagatttttttgttttacac 46
Query: 62 gaacaacacgaaccgatcgataaacctctgcatccagtgcttccc 106
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45 gaacaacacgaaccgatcgataaacctctgcatccagtgcttccc 1
>52498_ptc-miRf10676-akr:pmrd
Length = 101
Score = 159 bits (80), Expect = 5e-40
Identities = 94/101 (93%)
Strand = Plus / Minus
Query: 4 gaagacactggaggcagcggttcatcgatcttttcctgaagannnnnnngttttacacga 63
|||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 101 gaagacactggaggcagcggttcatcgatcttttcctgaagatttttttgttttacacga 42
Query: 64 acaacacgaaccgatcgataaacctctgcatccagtgcttc 104
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 41 acaacacgaaccgatcgataaacctctgcatccagtgcttc 1
>52243_ptc-miRf10421-akr:pmrd
Length = 101
Score = 159 bits (80), Expect = 5e-40
Identities = 94/101 (93%)
Strand = Plus / Minus
Query: 4 gaagacactggaggcagcggttcatcgatcttttcctgaagannnnnnngttttacacga 63
|||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 101 gaagacactggaggcagcggttcatcgatcttttcctgaagatttttttgttttacacga 42
Query: 64 acaacacgaaccgatcgataaacctctgcatccagtgcttc 104
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 41 acaacacgaaccgatcgataaacctctgcatccagtgcttc 1
>52400_ptc-miRf10578-akr:pmrd
Length = 103
Score = 89.7 bits (45), Expect = 4e-19
Identities = 86/102 (84%)
Strand = Plus / Minus
Query: 4 gaagacactggaggcagcggttcatcgatcttttcctgaagannnnnnngttttacacga 63
||||||||||||||||||||||||||||||| |||||| | |||| |||||
Sbjct: 102 gaagacactggaggcagcggttcatcgatctcttcctggccaattttttgtttagcacga 43
Query: 64 acaacacgaaccgatcgataaacctctgcatccagtgcttcc 105
| |||| |||||||||||||||||||||||||||| ||||||
Sbjct: 42 aaaacatgaaccgatcgataaacctctgcatccagcgcttcc 1
>52399_ptc-miRf10577-akr:pmrd
Length = 103
Score = 89.7 bits (45), Expect = 4e-19
Identities = 86/102 (84%)
Strand = Plus / Minus
Query: 4 gaagacactggaggcagcggttcatcgatcttttcctgaagannnnnnngttttacacga 63
||||||||||||||||||||||||||||||| |||||| | |||| |||||
Sbjct: 102 gaagacactggaggcagcggttcatcgatctcttcctggccaattttttgtttagcacga 43
Query: 64 acaacacgaaccgatcgataaacctctgcatccagtgcttcc 105
| |||| |||||||||||||||||||||||||||| ||||||
Sbjct: 42 aaaacatgaaccgatcgataaacctctgcatccagcgcttcc 1
>51616_ptc-miR162a:pmrd
Length = 107
Score = 89.7 bits (45), Expect = 4e-19
Identities = 86/102 (84%)
Strand = Plus / Plus
Query: 4 gaagacactggaggcagcggttcatcgatcttttcctgaagannnnnnngttttacacga 63
||||||||||||||||||||||||||||||| |||||| | |||| |||||
Sbjct: 4 gaagacactggaggcagcggttcatcgatctcttcctggccaattttttgtttagcacga 63
Query: 64 acaacacgaaccgatcgataaacctctgcatccagtgcttcc 105
| |||| |||||||||||||||||||||||||||| ||||||
Sbjct: 64 aaaacatgaaccgatcgataaacctctgcatccagcgcttcc 105
>48493_ghr-miR162a:pmrd
Length = 148
Score = 67.9 bits (34), Expect = 1e-12
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 5 aagacactggaggcagcggttcatcgatcttttcctga 42
|||||||||||||||||||||||||||||| |||||||
Sbjct: 18 aagacactggaggcagcggttcatcgatctcttcctga 55
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 75 cgatcgataaacctctgcatccag 98
||||||||||||||||||||||||
Sbjct: 91 cgatcgataaacctctgcatccag 114
>54387_rco-miR162:pmrd
Length = 96
Score = 58.0 bits (29), Expect = 1e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 9 cactggaggcagcggttcatcgatcttttcctg 41
|||||||||||||||||||||||||| ||||||
Sbjct: 1 cactggaggcagcggttcatcgatctcttcctg 33
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 75 cgatcgataaacctctgcatccag 98
||||||||||||||||||||||||
Sbjct: 72 cgatcgataaacctctgcatccag 95
>48423_cpa-miR162a:pmrd
Length = 109
Score = 58.0 bits (29), Expect = 1e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 9 cactggaggcagcggttcatcgatcttttcctg 41
|||||||||||||||||||||||||| ||||||
Sbjct: 11 cactggaggcagcggttcatcgatctcttcctg 43
Score = 50.1 bits (25), Expect = 3e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 66 aacacgaaccgatcgataaacctctgcatccag 98
|||| ||| ||||||||||||||||||||||||
Sbjct: 68 aacatgaatcgatcgataaacctctgcatccag 100
>54784_vvi-miR162:pmrd
Length = 103
Score = 56.0 bits (28), Expect = 5e-09
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 4 gaagacactggaggcagcggttcatcgatcttttcctgaa 43
|||| ||||||| |||||||||||||||||| ||||||||
Sbjct: 2 gaagtcactggatgcagcggttcatcgatctcttcctgaa 41
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 78 tcgataaacctctgcatccag 98
|||||||||||||||||||||
Sbjct: 73 tcgataaacctctgcatccag 93
>48545_gma-miR162a:pmrd
Length = 102
Score = 56.0 bits (28), Expect = 5e-09
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 4 gaagacactggaggcagcggttcatcgatcttttcctgaa 43
|||| ||||||| |||||||||||||||||| ||||||||
Sbjct: 3 gaagtcactggatgcagcggttcatcgatctcttcctgaa 42
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 75 cgatcgataaacctctgcatccag 98
||||||||||||||||||||||||
Sbjct: 70 cgatcgataaacctctgcatccag 93
>46937_ath-miR162a:pmrd
Length = 140
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 11 ctggaggcagcggttcatcgatcttttcctg 41
|||||||||||||||||||||||| ||||||
Sbjct: 25 ctggaggcagcggttcatcgatctcttcctg 55
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 76 gatcgataaacctctgcatccag 98
|||||||||||||||||||||||
Sbjct: 87 gatcgataaacctctgcatccag 109
>48834_osa-miR162a:pmrd
Length = 171
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 75 cgatcgataaacctctgcatccagt 99
|||||||||||||||||||||||||
Sbjct: 140 cgatcgataaacctctgcatccagt 164
>48707_mtr-miR162d:pmrd
Length = 87
Score = 50.1 bits (25), Expect = 3e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 11 ctggaggcagcggttcatcgatcttttcctgaa 43
||||| |||||||||||||||||| ||||||||
Sbjct: 1 ctggatgcagcggttcatcgatctgttcctgaa 33
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 78 tcgataaacctctgcatccag 98
|||||||||||||||||||||
Sbjct: 67 tcgataaacctctgcatccag 87
>48706_mtr-miR162c:pmrd
Length = 86
Score = 50.1 bits (25), Expect = 3e-07
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 11 ctggaggcagcggttcatcgatcttttcctgaa 43
||||| |||||||||||||||||| ||||||||
Sbjct: 86 ctggatgcagcggttcatcgatctgttcctgaa 54
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 78 tcgataaacctctgcatcca 97
||||||||||||||||||||
Sbjct: 20 tcgataaacctctgcatcca 1
>48705_mtr-miR162b:pmrd
Length = 85
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 12 tggaggcagcggttcatcgatcttttcctgaa 43
|||| |||||||||||||||||| ||||||||
Sbjct: 1 tggatgcagcggttcatcgatctgttcctgaa 32
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 78 tcgataaacctctgcatcca 97
||||||||||||||||||||
Sbjct: 66 tcgataaacctctgcatcca 85
>48682_llu-miR162:pmrd
Length = 80
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 75 cgatcgataaacctctgcatccag 98
||||||||||||||||||||||||
Sbjct: 57 cgatcgataaacctctgcatccag 80
>47354_ath-miRf10254-akr:pmrd
Length = 115
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 75 cgatcgataaacctctgcatccag 98
||||||||||||||||||||||||
Sbjct: 38 cgatcgataaacctctgcatccag 15
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 11 ctggaggcagcggttcatcgatc 33
|||||||||||||||||||||||
Sbjct: 102 ctggaggcagcggttcatcgatc 80
>46938_ath-miR162b:pmrd
Length = 111
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 75 cgatcgataaacctctgcatccag 98
||||||||||||||||||||||||
Sbjct: 76 cgatcgataaacctctgcatccag 99
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 ctggaggcagcggttcatcgatc 33
|||||||||||||||||||||||
Sbjct: 12 ctggaggcagcggttcatcgatc 34
>54948_zma-miR162b:pmrd
Length = 130
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 78 tcgataaacctctgcatccag 98
|||||||||||||||||||||
Sbjct: 110 tcgataaacctctgcatccag 130
>54542_sly-miR162:pmrd
Length = 99
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 78 tcgataaacctctgcatccag 98
|||||||||||||||||||||
Sbjct: 79 tcgataaacctctgcatccag 99
>48685_lsa-miR162:pmrd
Length = 89
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 78 tcgataaacctctgcatccag 98
|||||||||||||||||||||
Sbjct: 1 tcgataaacctctgcatccag 21
>48546_gma-miR162m:pmrd
Length = 367
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 78 tcgataaacctctgcatccag 98
|||||||||||||||||||||
Sbjct: 1 tcgataaacctctgcatccag 21
>48836_osa-miR162m:pmrd
Length = 114
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 75 cgatcgataaacctctgcatccag 98
|||||||||| |||||||||||||
Sbjct: 91 cgatcgataagcctctgcatccag 114
>48835_osa-miR162b:pmrd
Length = 134
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 75 cgatcgataaacctctgcatccag 98
|||||||||| |||||||||||||
Sbjct: 101 cgatcgataagcctctgcatccag 124
>48690_mdo-miR162:pmrd
Length = 88
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 11 ctggaggcagcggttcatcgatct 34
||||||||| ||||||||||||||
Sbjct: 1 ctggaggcatcggttcatcgatct 24
