miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>51862_ptc-miRf10040-akr:pmrd
Length = 91
Score = 168 bits (85), Expect = 4e-43
Identities = 85/85 (100%)
Strand = Plus / Minus
Query: 1 ggttccttgctggagaagcagggcacgtgcaaaatcctgatgaagtgcttacactttgca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87 ggttccttgctggagaagcagggcacgtgcaaaatcctgatgaagtgcttacactttgca 28
Query: 61 cgcgctcttcttctccaacacgggc 85
|||||||||||||||||||||||||
Sbjct: 27 cgcgctcttcttctccaacacgggc 3
>51619_ptc-miR164a:pmrd
Length = 85
Score = 168 bits (85), Expect = 4e-43
Identities = 85/85 (100%)
Strand = Plus / Plus
Query: 1 ggttccttgctggagaagcagggcacgtgcaaaatcctgatgaagtgcttacactttgca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggttccttgctggagaagcagggcacgtgcaaaatcctgatgaagtgcttacactttgca 60
Query: 61 cgcgctcttcttctccaacacgggc 85
|||||||||||||||||||||||||
Sbjct: 61 cgcgctcttcttctccaacacgggc 85
>51622_ptc-miR164d:pmrd
Length = 99
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 9 gctggagaagcagggcacgtgcaaaatcct 38
||||||||||||||||||||||||||||||
Sbjct: 9 gctggagaagcagggcacgtgcaaaatcct 38
>51621_ptc-miR164c:pmrd
Length = 82
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 6 cttgctggagaagcagggcacgtgcaa 32
|||||||||||||||||||||||||||
Sbjct: 6 cttgctggagaagcagggcacgtgcaa 32
>48547_gma-miR164:pmrd
Length = 95
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 4 tccttgctggagaagcagggcacgtgcaa 32
|||||| ||||||||||||||||||||||
Sbjct: 4 tccttgttggagaagcagggcacgtgcaa 32
Score = 38.2 bits (19), Expect = 0.001
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 54 ctttgcacgcgctcttcttctccaacacggg 84
||||||||| |||| |||||||||||||||
Sbjct: 62 ctttgcacgtgctccccttctccaacacggg 92
>48419_cav-miR164:pmrd
Length = 95
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 4 tccttgctggagaagcagggcacgtgcaa 32
|||||| ||||||||||||||||||||||
Sbjct: 4 tccttgttggagaagcagggcacgtgcaa 32
>54785_vvi-miR164a:pmrd
Length = 121
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 4 tccttgctggagaagcagggcacgtgca 31
|||||| |||||||||||||||||||||
Sbjct: 4 tccttgttggagaagcagggcacgtgca 31
>48708_mtr-miR164a:pmrd
Length = 99
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 6 cttgctggagaagcagggcacgtgcaaa 33
|||| |||||||||||||||||||||||
Sbjct: 1 cttgttggagaagcagggcacgtgcaaa 28
>54952_zma-miR164d:pmrd
Length = 216
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 gctggagaagcagggcacgtgca 31
|||||||||||||||||||||||
Sbjct: 18 gctggagaagcagggcacgtgca 40
>54949_zma-miR164a:pmrd
Length = 152
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 gctggagaagcagggcacgtgca 31
|||||||||||||||||||||||
Sbjct: 17 gctggagaagcagggcacgtgca 39
>54411_sbi-miR164b:pmrd
Length = 111
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 8 tgctggagaagcagggcacgtgc 30
|||||||||||||||||||||||
Sbjct: 18 tgctggagaagcagggcacgtgc 40
>48841_osa-miR164d:pmrd
Length = 94
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 8 tgctggagaagcagggcacgtgc 30
|||||||||||||||||||||||
Sbjct: 8 tgctggagaagcagggcacgtgc 30
>48710_mtr-miR164c:pmrd
Length = 86
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 6 cttgctggagaagcagggcacgtgcaa 32
|||| ||||||||||||||||||||||
Sbjct: 1 cttgttggagaagcagggcacgtgcaa 27
>48398_bra-miR164a:pmrd
Length = 92
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tggagaagcagggcacgtgcaaa 33
|||||||||||||||||||||||
Sbjct: 10 tggagaagcagggcacgtgcaaa 32
>48341_bna-miR164:pmrd
Length = 86
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tggagaagcagggcacgtgcaaa 33
|||||||||||||||||||||||
Sbjct: 7 tggagaagcagggcacgtgcaaa 29
>47540_ath-miRf10440-akr:pmrd
Length = 113
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 11 tggagaagcagggcacgtgcaaa 33
|||||||||||||||||||||||
Sbjct: 95 tggagaagcagggcacgtgcaaa 73
>47539_ath-miRf10439-akr:pmrd
Length = 115
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 11 tggagaagcagggcacgtgcaaa 33
|||||||||||||||||||||||
Sbjct: 96 tggagaagcagggcacgtgcaaa 74
>46940_ath-miR164a:pmrd
Length = 113
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tggagaagcagggcacgtgcaaa 33
|||||||||||||||||||||||
Sbjct: 19 tggagaagcagggcacgtgcaaa 41
>54788_vvi-miR164d:pmrd
Length = 118
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 6 cttgctggagaagcagggcacgtgca 31
|||| |||||||||||||||||||||
Sbjct: 6 cttgatggagaagcagggcacgtgca 31
>48840_osa-miR164c:pmrd
Length = 119
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 6 cttgctggagaagcagggcacgtgcaaaat 35
|||| ||||||||||||| |||||||||||
Sbjct: 6 cttgttggagaagcagggtacgtgcaaaat 35
>48709_mtr-miR164b:pmrd
Length = 144
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tggagaagcagggcacgtgcaa 32
||||||||||||||||||||||
Sbjct: 6 tggagaagcagggcacgtgcaa 27
>54956_zma-miR164h:pmrd
Length = 96
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tggagaagcagggcacgtgca 31
|||||||||||||||||||||
Sbjct: 4 tggagaagcagggcacgtgca 24
>54955_zma-miR164g:pmrd
Length = 116
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tggagaagcagggcacgtgca 31
|||||||||||||||||||||
Sbjct: 1 tggagaagcagggcacgtgca 21
>54954_zma-miR164f:pmrd
Length = 177
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tggagaagcagggcacgtgca 31
|||||||||||||||||||||
Sbjct: 1 tggagaagcagggcacgtgca 21
>54953_zma-miR164e:pmrd
Length = 242
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tggagaagcagggcacgtgca 31
|||||||||||||||||||||
Sbjct: 4 tggagaagcagggcacgtgca 24
>54951_zma-miR164c:pmrd
Length = 270
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tggagaagcagggcacgtgca 31
|||||||||||||||||||||
Sbjct: 18 tggagaagcagggcacgtgca 38
>54950_zma-miR164b:pmrd
Length = 128
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tggagaagcagggcacgtgca 31
|||||||||||||||||||||
Sbjct: 21 tggagaagcagggcacgtgca 41
>54787_vvi-miR164c:pmrd
Length = 97
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tggagaagcagggcacgtgca 31
|||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgca 31
>54676_tae-miR164b:pmrd
Length = 152
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tggagaagcagggcacgtgca 31
|||||||||||||||||||||
Sbjct: 1 tggagaagcagggcacgtgca 21
>54414_sbi-miR164e:pmrd
Length = 205
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tggagaagcagggcacgtgca 31
|||||||||||||||||||||
Sbjct: 3 tggagaagcagggcacgtgca 23
>54413_sbi-miR164d:pmrd
Length = 160
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tggagaagcagggcacgtgca 31
|||||||||||||||||||||
Sbjct: 1 tggagaagcagggcacgtgca 21
>54410_sbi-miR164:pmrd
Length = 126
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tggagaagcagggcacgtgca 31
|||||||||||||||||||||
Sbjct: 1 tggagaagcagggcacgtgca 21
>53142_ptc-miRf11320-akr:pmrd
Length = 167
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tggagaagcagggcacgtgca 31
|||||||||||||||||||||
Sbjct: 15 tggagaagcagggcacgtgca 35
>52901_ptc-miRf11079-akr:pmrd
Length = 171
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tggagaagcagggcacgtgca 31
|||||||||||||||||||||
Sbjct: 15 tggagaagcagggcacgtgca 35
>51624_ptc-miR164f:pmrd
Length = 90
Score = 42.1 bits (21), Expect = 6e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 8 tgctggagaagcagggcacgtgcaaaatc 36
||||||||||||||||||| ||| |||||
Sbjct: 8 tgctggagaagcagggcacatgctaaatc 36
>51623_ptc-miR164e:pmrd
Length = 155
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tggagaagcagggcacgtgca 31
|||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgca 31
>51620_ptc-miR164b:pmrd
Length = 162
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tggagaagcagggcacgtgca 31
|||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgca 31
>51348_ppl-miR164:pmrd
Length = 159
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tggagaagcagggcacgtgca 31
|||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgca 31
>50414_osa-miRf11199-akr:pmrd
Length = 146
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tggagaagcagggcacgtgca 31
|||||||||||||||||||||
Sbjct: 13 tggagaagcagggcacgtgca 33
>48843_osa-miR164f:pmrd
Length = 210
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tggagaagcagggcacgtgca 31
|||||||||||||||||||||
Sbjct: 24 tggagaagcagggcacgtgca 44
>48839_osa-miR164b:pmrd
Length = 109
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tggagaagcagggcacgtgca 31
|||||||||||||||||||||
Sbjct: 9 tggagaagcagggcacgtgca 29
>48838_osa-miR164a:pmrd
Length = 156
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tggagaagcagggcacgtgca 31
|||||||||||||||||||||
Sbjct: 17 tggagaagcagggcacgtgca 37
>48473_csi-miR164:pmrd
Length = 168
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tggagaagcagggcacgtgca 31
|||||||||||||||||||||
Sbjct: 1 tggagaagcagggcacgtgca 21
>47347_ath-miRf10247-akr:pmrd
Length = 159
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tggagaagcagggcacgtgca 31
|||||||||||||||||||||
Sbjct: 6 tggagaagcagggcacgtgca 26
>46942_ath-miR164c:pmrd
Length = 102
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 6 cttgctggagaagcagggcacgtgc 30
|||| ||||||||||||||||||||
Sbjct: 6 cttgatggagaagcagggcacgtgc 30
>46941_ath-miR164b:pmrd
Length = 153
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tggagaagcagggcacgtgca 31
|||||||||||||||||||||
Sbjct: 3 tggagaagcagggcacgtgca 23
>54786_vvi-miR164b:pmrd
Length = 93
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 8 tgctggagaagcagggcac 26
|||||||||||||||||||
Sbjct: 8 tgctggagaagcagggcac 26
>48842_osa-miR164e:pmrd
Length = 132
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 11 tggagaagcagggcacgtg 29
|||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtg 29
