miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00647;MIR164;AY728403.1/144-291 3694:Populus trichocarpa
Length = 148
Score = 293 bits (148), Expect = 4e-79
Identities = 148/148 (100%)
Strand = Plus / Plus
Query: 9 gatggagaagcagggcacgtgcactactaactcatgcacacagagagggagacgcatttc 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gatggagaagcagggcacgtgcactactaactcatgcacacagagagggagacgcatttc 60
Query: 69 ttgctggagttacgagttacgactcttacctactattgattttgttagctccagtgagtt 128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttgctggagttacgagttacgactcttacctactattgattttgttagctccagtgagtt 120
Query: 129 agttattcatgtgcctgtcttcctcatc 156
||||||||||||||||||||||||||||
Sbjct: 121 agttattcatgtgcctgtcttcctcatc 148
>RF00647;MIR164;AARH01006944.1/110052-110208 3694:Populus
trichocarpa
Length = 157
Score = 167 bits (84), Expect = 6e-41
Identities = 142/162 (87%), Gaps = 7/162 (4%)
Strand = Plus / Plus
Query: 1 gtgagcaagatggagaagcagggcacgtgcactactaactcatgcacacagagagggaga 60
||||||||||||||||||||||||||||||| ||||||||||||||||||||| | ||||
Sbjct: 1 gtgagcaagatggagaagcagggcacgtgcattactaactcatgcacacagagtgagaga 60
Query: 61 cgcatttcttgctggagttacgagttacgactcttacctactattgattttgttagctcc 120
|||||||||||| |||||| |||||||||||||||| |||| |||| ||| |
Sbjct: 61 gacatttcttgctg-------gagttatgactcttacctactatagattgtgttggcttc 113
Query: 121 agtgagttagttattcatgtgcctgtcttcctcatcatgatc 162
|| ||||||||| |||||||||||||||||| ||||||||||
Sbjct: 114 agcgagttagttcttcatgtgcctgtcttccccatcatgatc 155
>RF00647;MIR164;EU421160.1/170-25 29780:Mangifera indica (mango)
Length = 146
Score = 87.7 bits (44), Expect = 4e-17
Identities = 47/48 (97%)
Strand = Plus / Plus
Query: 3 gagcaagatggagaagcagggcacgtgcactactaactcatgcacaca 50
||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 3 gagcaagatggagaagcagggcacgtgcattactaactcatgcacaca 50
>RF00647;MIR164;ABIM01008908.1/593-707 3649:Carica papaya (papaya)
Length = 115
Score = 83.8 bits (42), Expect = 7e-16
Identities = 45/46 (97%)
Strand = Plus / Plus
Query: 2 tgagcaagatggagaagcagggcacgtgcactactaactcatgcac 47
|||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 2 tgagcaagatggagaagcagggcacgtgcattactaactcatgcac 47
>RF00647;MIR164;AASG02020922.1/1372-1495 3988:Ricinus communis
(castor bean)
Length = 124
Score = 83.8 bits (42), Expect = 7e-16
Identities = 45/46 (97%)
Strand = Plus / Plus
Query: 1 gtgagcaagatggagaagcagggcacgtgcactactaactcatgca 46
||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1 gtgagcaagatggagaagcagggcacgtgcattactaactcatgca 46
>RF00647;MIR164;CAAP02000884.1/12240-12399 29760:Vitis vinifera
Length = 160
Score = 75.8 bits (38), Expect = 2e-13
Identities = 44/46 (95%)
Strand = Plus / Plus
Query: 2 tgagcaagatggagaagcagggcacgtgcactactaactcatgcac 47
|||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 2 tgagcaagatggagaagcagggcacgtgcattactagctcatgcac 47
>RF00647;MIR164;AC150384.17/72119-72271 3880:Medicago truncatula
(barrel medic)
Length = 153
Score = 69.9 bits (35), Expect = 1e-11
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 6 caagatggagaagcagggcacgtgcactactaactcatg 44
|||||||||||||||||||||||||| ||||||||||||
Sbjct: 6 caagatggagaagcagggcacgtgcaatactaactcatg 44
>RF00647;MIR164;BABK01024863.1/539-828 34305:Lotus japonicus
Length = 290
Score = 69.9 bits (35), Expect = 1e-11
Identities = 41/43 (95%)
Strand = Plus / Plus
Query: 2 tgagcaagatggagaagcagggcacgtgcactactaactcatg 44
|||||||||||||||||||||||||||||| |||||||||||
Sbjct: 2 tgagcaagatggagaagcagggcacgtgcaacactaactcatg 44
>RF00647;MIR164;FM163716.1/40-210 3702:Arabidopsis thaliana (thale
cress)
Length = 171
Score = 67.9 bits (34), Expect = 4e-11
Identities = 40/42 (95%)
Strand = Plus / Plus
Query: 2 tgagcaagatggagaagcagggcacgtgcactactaactcat 43
|||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 2 tgagcaagatggagaagcagggcacgtgcattactagctcat 43
>RF00647;MIR164;FM163713.1/40-209 3702:Arabidopsis thaliana (thale
cress)
Length = 170
Score = 67.9 bits (34), Expect = 4e-11
Identities = 40/42 (95%)
Strand = Plus / Plus
Query: 2 tgagcaagatggagaagcagggcacgtgcactactaactcat 43
|||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 2 tgagcaagatggagaagcagggcacgtgcattactagctcat 43
>RF00647;MIR164;EU548743.1/136-304 3702:Arabidopsis thaliana
(thale cress)
Length = 169
Score = 67.9 bits (34), Expect = 4e-11
Identities = 40/42 (95%)
Strand = Plus / Plus
Query: 2 tgagcaagatggagaagcagggcacgtgcactactaactcat 43
|||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 2 tgagcaagatggagaagcagggcacgtgcattactagctcat 43
>RF00647;MIR164;BABK01001893.1/4565-4271 34305:Lotus japonicus
Length = 295
Score = 65.9 bits (33), Expect = 2e-10
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 6 caagatggagaagcagggcacgtgcactactaactcatgcacaca 50
|||||||||||||||||||||||||| | |||||||||| |||||
Sbjct: 6 caagatggagaagcagggcacgtgcaatgctaactcatgaacaca 50
Score = 54.0 bits (27), Expect = 6e-07
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 114 tagctccagtgagttagttattcatgtgcctgtcttcctcatcatga 160
|||||||||||||||||| |||||||||| |||||| ||||||||
Sbjct: 245 tagctccagtgagttagtgcttcatgtgcccctcttccccatcatga 291
>RF00647;MIR164;FM162586.1/101-259 3451:Aquilegia vulgaris
Length = 159
Score = 58.0 bits (29), Expect = 4e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 5 gcaagatggagaagcagggcacgtgcactacta 37
||||||||||||||||||||||||||| |||||
Sbjct: 5 gcaagatggagaagcagggcacgtgcattacta 37
>RF00647;MIR164;BABK01023841.1/800-898 34305:Lotus japonicus
Length = 99
Score = 56.0 bits (28), Expect = 2e-07
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 4 agcaagatggagaagcagggcacgtgcactactaactcat 43
|||| ||||||||||||||||||||||| | |||||||||
Sbjct: 4 agcatgatggagaagcagggcacgtgcaatgctaactcat 43
>RF00647;MIR164;FM162587.1/172-265 310672:Cabomba aquatica
Length = 94
Score = 56.0 bits (28), Expect = 2e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 5 gcaagatggagaagcagggcacgtgcactact 36
||||||||||||||||||||||||||| ||||
Sbjct: 5 gcaagatggagaagcagggcacgtgcattact 36
>RF00647;MIR164;AM449363.2/29982-30065 29760:Vitis vinifera
Length = 84
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 gatggagaagcagggcacgtgca 31
|||||||||||||||||||||||
Sbjct: 9 gatggagaagcagggcacgtgca 31
>RF00647;MIR164;FM162590.1/70-202 13333:Amborella trichopoda
Length = 133
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 gatggagaagcagggcacgtgca 31
|||||||||||||||||||||||
Sbjct: 9 gatggagaagcagggcacgtgca 31
>RF00647;MIR164;EU548763.1/160-261 3702:Arabidopsis thaliana
(thale cress)
Length = 102
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 gatggagaagcagggcacgtgc 30
||||||||||||||||||||||
Sbjct: 9 gatggagaagcagggcacgtgc 30
