miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00075;mir-166;AARH01007982.1/90633-90310 3694:Populus trichocarpa
Length = 324
Score = 642 bits (324), Expect = 0.0
Identities = 324/324 (100%)
Strand = Plus / Plus
Query: 5 ggtgtttggaatgaagtttgatccaagatccttgtctctcccgttaacttagtctctgtt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggtgtttggaatgaagtttgatccaagatccttgtctctcccgttaacttagtctctgtt 60
Query: 65 actgttaggttttcattactgagtgtatttgcagcccccttgtctgattttagcatcatg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 actgttaggttttcattactgagtgtatttgcagcccccttgtctgattttagcatcatg 120
Query: 125 agagtaggaagtgctggtgatcatagggtttggttcaagatccatttgactcttctcttt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 agagtaggaagtgctggtgatcatagggtttggttcaagatccatttgactcttctcttt 180
Query: 185 atatctctcctgtgtcctagctggtaatctgtagtagtcttaattatcccttacttcttg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 atatctctcctgtgtcctagctggtaatctgtagtagtcttaattatcccttacttcttg 240
Query: 245 ttaatttttaggtttgatcttgcaagtaattatatttggaaaatatcataaaatgatctc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ttaatttttaggtttgatcttgcaagtaattatatttggaaaatatcataaaatgatctc 300
Query: 305 ggaccaggcttcattccttacacc 328
||||||||||||||||||||||||
Sbjct: 301 ggaccaggcttcattccttacacc 324
>RF00075;mir-166;AARH01005662.1/95261-95577 3694:Populus trichocarpa
Length = 317
Score = 113 bits (57), Expect = 2e-24
Identities = 84/93 (90%)
Strand = Plus / Plus
Query: 236 tacttcttgttaatttttaggtttgatcttgcaagtaattatatttggaaaatatcataa 295
|||||| |||||||| |||||||| ||||||||||| ||||||||| | ||| ||||| |
Sbjct: 225 tacttcctgttaattcttaggttttatcttgcaagttattatatttagtaaacatcatga 284
Query: 296 aatgatctcggaccaggcttcattccttacacc 328
| |||||||||||||||||||||||||||||||
Sbjct: 285 actgatctcggaccaggcttcattccttacacc 317
Score = 89.7 bits (45), Expect = 2e-17
Identities = 45/45 (100%)
Strand = Plus / Plus
Query: 5 ggtgtttggaatgaagtttgatccaagatccttgtctctcccgtt 49
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggtgtttggaatgaagtttgatccaagatccttgtctctcccgtt 45
>RF00075;mir-166;CAAP02007291.1/14711-14590 29760:Vitis vinifera
Length = 122
Score = 58.0 bits (29), Expect = 8e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 5 ggtgtttggaatgaagtttgatccaagatcctt 37
|||||||||||||| ||||||||||||||||||
Sbjct: 1 ggtgtttggaatgaggtttgatccaagatcctt 33
Score = 54.0 bits (27), Expect = 1e-06
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 298 tgatctcggaccaggcttcattccttacacc 328
||||||||||||||||||||||||| |||||
Sbjct: 92 tgatctcggaccaggcttcattcctgacacc 122
>RF00075;mir-166;AC148816.3/87512-87332 3880:Medicago truncatula
(barrel medic)
Length = 181
Score = 54.0 bits (27), Expect = 1e-06
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 298 tgatctcggaccaggcttcattccttacacc 328
||||||||||||||||||||||||| |||||
Sbjct: 151 tgatctcggaccaggcttcattcctcacacc 181
>RF00075;mir-166;AC235255.1/12904-12739 3847:Glycine max (soybean)
Length = 166
Score = 54.0 bits (27), Expect = 1e-06
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 298 tgatctcggaccaggcttcattccttacacc 328
||||||||||||||||||||||||| |||||
Sbjct: 136 tgatctcggaccaggcttcattcctcacacc 166
Score = 52.0 bits (26), Expect = 5e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 5 ggtgtttggaatgaagtttgatccaagatc 34
|||||||||||||| |||||||||||||||
Sbjct: 1 ggtgtttggaatgaggtttgatccaagatc 30
>RF00075;mir-166;AARH01004299.1/36070-36161 3694:Populus trichocarpa
Length = 92
Score = 52.0 bits (26), Expect = 5e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 296 aatgatctcggaccaggcttcattcc 321
||||||||||||||||||||||||||
Sbjct: 60 aatgatctcggaccaggcttcattcc 85
>RF00075;mir-166;AASG02003618.1/9737-9830 3988:Ricinus communis
(castor bean)
Length = 94
Score = 52.0 bits (26), Expect = 5e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 296 aatgatctcggaccaggcttcattcc 321
||||||||||||||||||||||||||
Sbjct: 62 aatgatctcggaccaggcttcattcc 87
>RF00075;mir-166;AC148487.14/34671-34762 3880:Medicago truncatula
(barrel medic)
Length = 92
Score = 52.0 bits (26), Expect = 5e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 296 aatgatctcggaccaggcttcattcc 321
||||||||||||||||||||||||||
Sbjct: 60 aatgatctcggaccaggcttcattcc 85
>RF00075;mir-166;AM448542.2/4591-4502 29760:Vitis vinifera
Length = 90
Score = 52.0 bits (26), Expect = 5e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 296 aatgatctcggaccaggcttcattcc 321
||||||||||||||||||||||||||
Sbjct: 58 aatgatctcggaccaggcttcattcc 83
>RF00075;mir-166;AP008218.1/18370254-18370388 39947:Oryza sativa
Japonica Group
Length = 135
Score = 52.0 bits (26), Expect = 5e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 299 gatctcggaccaggcttcattccttacacc 328
|||||||||||||||||||||||| |||||
Sbjct: 106 gatctcggaccaggcttcattcctcacacc 135
>RF00075;mir-166;AC138001.2/40361-40495 39947:Oryza sativa
Japonica Group
Length = 135
Score = 52.0 bits (26), Expect = 5e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 5 ggtgtttggaatgaagtttgatccaagatc 34
||||||||||||| ||||||||||||||||
Sbjct: 1 ggtgtttggaatgcagtttgatccaagatc 30
>RF00075;mir-166;DQ908436.1/479-591 3635:Gossypium hirsutum (upland
cotton)
Length = 113
Score = 48.1 bits (24), Expect = 8e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 299 gatctcggaccaggcttcattcct 322
||||||||||||||||||||||||
Sbjct: 84 gatctcggaccaggcttcattcct 107
>RF00075;mir-166;ABIM01012777.1/4514-4390 3649:Carica papaya
(papaya)
Length = 125
Score = 48.1 bits (24), Expect = 8e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 298 tgatctcggaccaggcttcattcc 321
||||||||||||||||||||||||
Sbjct: 95 tgatctcggaccaggcttcattcc 118
>RF00075;mir-166;ABIM01018276.1/2199-2062 3649:Carica papaya
(papaya)
Length = 138
Score = 48.1 bits (24), Expect = 8e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 298 tgatctcggaccaggcttcattcc 321
||||||||||||||||||||||||
Sbjct: 108 tgatctcggaccaggcttcattcc 131
>RF00075;mir-166;AARH01003608.1/24010-23917 3694:Populus trichocarpa
Length = 94
Score = 48.1 bits (24), Expect = 8e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 298 tgatctcggaccaggcttcattcc 321
||||||||||||||||||||||||
Sbjct: 64 tgatctcggaccaggcttcattcc 87
>RF00075;mir-166;ABXC01005455.1/25016-25131 4558:Sorghum bicolor
(sorghum)
Length = 116
Score = 48.1 bits (24), Expect = 8e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 301 tctcggaccaggcttcattccttacacc 328
|||||||||||||||||||||| |||||
Sbjct: 89 tctcggaccaggcttcattcctcacacc 116
>RF00075;mir-166;ABXC01002952.1/108749-108653 4558:Sorghum bicolor
(sorghum)
Length = 97
Score = 48.1 bits (24), Expect = 8e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 298 tgatctcggaccaggcttcattcc 321
||||||||||||||||||||||||
Sbjct: 67 tgatctcggaccaggcttcattcc 90
>RF00075;mir-166;AP008208.1/26148565-26148667 39947:Oryza sativa
Japonica Group
Length = 103
Score = 48.1 bits (24), Expect = 8e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 298 tgatctcggaccaggcttcattcc 321
||||||||||||||||||||||||
Sbjct: 73 tgatctcggaccaggcttcattcc 96
>RF00075;mir-166;AARH01003279.1/141842-141699 3694:Populus
trichocarpa
Length = 144
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 301 tctcggaccaggcttcattcctt 323
|||||||||||||||||||||||
Sbjct: 117 tctcggaccaggcttcattcctt 139
>RF00075;mir-166;AC155889.2/42101-41932 3880:Medicago truncatula
(barrel medic)
Length = 170
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 300 atctcggaccaggcttcattcct 322
|||||||||||||||||||||||
Sbjct: 142 atctcggaccaggcttcattcct 164
>RF00075;mir-166;AC226041.1/11826-11708 4641:Musa acuminata
Length = 119
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 299 gatctcggaccaggcttcattcc 321
|||||||||||||||||||||||
Sbjct: 90 gatctcggaccaggcttcattcc 112
>RF00075;mir-166;EU945393.1/89-202 4577:Zea mays
Length = 114
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 299 gatctcggaccaggcttcattcc 321
|||||||||||||||||||||||
Sbjct: 85 gatctcggaccaggcttcattcc 107
>RF00075;mir-166;EU956093.1/113-209 4577:Zea mays
Length = 97
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 299 gatctcggaccaggcttcattcc 321
|||||||||||||||||||||||
Sbjct: 68 gatctcggaccaggcttcattcc 90
>RF00075;mir-166;AY501432.1/1-122 4577:Zea mays
Length = 122
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 299 gatctcggaccaggcttcattcc 321
|||||||||||||||||||||||
Sbjct: 95 gatctcggaccaggcttcattcc 117
>RF00075;mir-166;AY501431.1/1-212 4577:Zea mays
Length = 212
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 299 gatctcggaccaggcttcattcc 321
|||||||||||||||||||||||
Sbjct: 185 gatctcggaccaggcttcattcc 207
>RF00075;mir-166;ABXC01000193.1/181030-180913 4558:Sorghum bicolor
(sorghum)
Length = 118
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 299 gatctcggaccaggcttcattcc 321
|||||||||||||||||||||||
Sbjct: 89 gatctcggaccaggcttcattcc 111
>RF00075;mir-166;ABXC01006910.1/39676-39486 4558:Sorghum bicolor
(sorghum)
Length = 191
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 299 gatctcggaccaggcttcattcc 321
|||||||||||||||||||||||
Sbjct: 162 gatctcggaccaggcttcattcc 184
>RF00075;mir-166;AK251614.1/146-305 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 160
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 299 gatctcggaccaggcttcattcc 321
|||||||||||||||||||||||
Sbjct: 131 gatctcggaccaggcttcattcc 153
>RF00075;mir-166;AAAA02020902.1/104196-104017 39946:Oryza sativa
Indica Group
Length = 180
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 299 gatctcggaccaggcttcattcc 321
|||||||||||||||||||||||
Sbjct: 151 gatctcggaccaggcttcattcc 173
>RF00075;mir-166;AP003614.2/6887-6709 39947:Oryza sativa Japonica
Group
Length = 179
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 299 gatctcggaccaggcttcattcc 321
|||||||||||||||||||||||
Sbjct: 150 gatctcggaccaggcttcattcc 172
>RF00075;mir-166;AAAA02030332.1/11899-12019 39946:Oryza sativa
Indica Group
Length = 121
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 299 gatctcggaccaggcttcattcc 321
|||||||||||||||||||||||
Sbjct: 92 gatctcggaccaggcttcattcc 114
