miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>51640_ptc-miR166p:pmrd
Length = 146
Score = 289 bits (146), Expect = 3e-79
Identities = 146/146 (100%)
Strand = Plus / Plus
Query: 1 taaggttgagaggaacgctgtctgggtcgaggtcatggaggccatgattatacataaatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 taaggttgagaggaacgctgtctgggtcgaggtcatggaggccatgattatacataaatg 60
Query: 61 gcattatctgatgacagcccagataatcgatgcacctgtcttgaacctaaatgattctcg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gcattatctgatgacagcccagataatcgatgcacctgtcttgaacctaaatgattctcg 120
Query: 121 gaccaggctccattccttccaaccat 146
||||||||||||||||||||||||||
Sbjct: 121 gaccaggctccattccttccaaccat 146
>51641_ptc-miR166q:pmrd
Length = 151
Score = 97.6 bits (49), Expect = 2e-21
Identities = 70/77 (90%)
Strand = Plus / Plus
Query: 3 aggttgagaggaacgctgtctgggtcgaggtcatggaggccatgattatacataaatggc 62
||||||||||||| | ||||||| |||||||||| ||||||||||||||||| | |||||
Sbjct: 3 aggttgagaggaatgttgtctggctcgaggtcattgaggccatgattatacagacatggc 62
Query: 63 attatctgatgacagcc 79
|||| ||||||||||||
Sbjct: 63 attacctgatgacagcc 79
>52336_ptc-miRf10514-akr:pmrd
Length = 144
Score = 93.7 bits (47), Expect = 3e-20
Identities = 68/75 (90%)
Strand = Plus / Plus
Query: 5 gttgagaggaacgctgtctgggtcgaggtcatggaggccatgattatacataaatggcat 64
||||||||||| | ||||||| |||||||||| ||||||||||||||||| | |||||||
Sbjct: 1 gttgagaggaatgttgtctggctcgaggtcattgaggccatgattatacagacatggcat 60
Query: 65 tatctgatgacagcc 79
|| ||||||||||||
Sbjct: 61 tacctgatgacagcc 75
>48345_bna-miR166d:pmrd
Length = 128
Score = 58.0 bits (29), Expect = 2e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 104 aacctaaatgattctcggaccaggctccattcc 136
|||||||||||||||||||||||||| ||||||
Sbjct: 63 aacctaaatgattctcggaccaggcttcattcc 95
>54379_pvu-miR166:pmrd
Length = 144
Score = 54.0 bits (27), Expect = 3e-08
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 3 aggttgagaggaacgctgtctgggtcgaggtcatggagg 41
||||||||||||| | ||||||| |||||||||||||||
Sbjct: 2 aggttgagaggaatgttgtctggctcgaggtcatggagg 40
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 109 aaatgattctcggaccaggctccattcc 136
||||||||||||||||||||| ||||||
Sbjct: 105 aaatgattctcggaccaggcttcattcc 132
>48549_gma-miR166b:pmrd
Length = 167
Score = 54.0 bits (27), Expect = 3e-08
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 3 aggttgagaggaacgctgtctgggtcgaggtcatggagg 41
||||||||||||| | ||||||| |||||||||||||||
Sbjct: 14 aggttgagaggaatgttgtctggctcgaggtcatggagg 52
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 109 aaatgattctcggaccaggctccattcc 136
||||||||||||||||||||| ||||||
Sbjct: 119 aaatgattctcggaccaggcttcattcc 146
>46948_ath-miR166d:pmrd
Length = 113
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 106 cctaaatgattctcggaccaggctccattcc 136
|||||||||||||||||||||||| ||||||
Sbjct: 75 cctaaatgattctcggaccaggcttcattcc 105
>46951_ath-miR166g:pmrd
Length = 122
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 107 ctaaatgattctcggaccaggctccattcc 136
||||||||||||||||||||||| ||||||
Sbjct: 74 ctaaatgattctcggaccaggcttcattcc 103
>46947_ath-miR166c:pmrd
Length = 139
Score = 46.1 bits (23), Expect = 7e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 106 cctaaatgattctcggaccaggctccattcc 136
|||| ||||||||||||||||||| ||||||
Sbjct: 91 cctagatgattctcggaccaggcttcattcc 121
