miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00075;mir-166;AC216447.1/33715-33853 3694:Populus trichocarpa
Length = 139
Score = 268 bits (135), Expect = 2e-71
Identities = 138/139 (99%)
Strand = Plus / Plus
Query: 5 gttgagaggaacgctgtctgggtcgaggtcatggaggccatgattatacataaatggcat 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gttgagaggaacgctgtctgggtcgaggtcatggaggccatgattatacataaatggcat 60
Query: 65 tatctgatgacagcccagataatcgatgcacctgtcttgaacctaaatgattctcggacc 124
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 61 tatctgatgacagcccagataatcgatgcacctttcttgaacctaaatgattctcggacc 120
Query: 125 aggctccattccttccaac 143
|||||||||||||||||||
Sbjct: 121 aggctccattccttccaac 139
>RF00075;mir-166;AARH01003279.1/141842-141699 3694:Populus
trichocarpa
Length = 144
Score = 93.7 bits (47), Expect = 6e-19
Identities = 68/75 (90%)
Strand = Plus / Plus
Query: 5 gttgagaggaacgctgtctgggtcgaggtcatggaggccatgattatacataaatggcat 64
||||||||||| | ||||||| |||||||||| ||||||||||||||||| | |||||||
Sbjct: 1 gttgagaggaatgttgtctggctcgaggtcattgaggccatgattatacagacatggcat 60
Query: 65 tatctgatgacagcc 79
|| ||||||||||||
Sbjct: 61 tacctgatgacagcc 75
>RF00075;mir-166;AC189313.2/128870-128784 51351:Brassica rapa subsp.
pekinensis
Length = 87
Score = 58.0 bits (29), Expect = 3e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 104 aacctaaatgattctcggaccaggctccattcc 136
|||||||||||||||||||||||||| ||||||
Sbjct: 48 aacctaaatgattctcggaccaggcttcattcc 80
>RF00075;mir-166;ABIM01027778.1/13122-13246 3649:Carica papaya
(papaya)
Length = 125
Score = 54.0 bits (27), Expect = 5e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 106 cctaaatgattctcggaccaggctccattcc 136
|||||||||||||||||||||||| ||||||
Sbjct: 88 cctaaatgattctcggaccaggcttcattcc 118
Score = 50.1 bits (25), Expect = 8e-06
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 5 gttgagaggaacgctgtctgggtcgaggtcatggagg 41
||||||||||| | ||||||| |||||||||||||||
Sbjct: 1 gttgagaggaatgttgtctggctcgaggtcatggagg 37
>RF00075;mir-166;EU548871.1/183-293 3702:Arabidopsis thaliana (thale
cress)
Length = 111
Score = 54.0 bits (27), Expect = 5e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 106 cctaaatgattctcggaccaggctccattcc 136
|||||||||||||||||||||||| ||||||
Sbjct: 74 cctaaatgattctcggaccaggcttcattcc 104
>RF00075;mir-166;EU548914.1/298-397 3702:Arabidopsis thaliana (thale
cress)
Length = 100
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 107 ctaaatgattctcggaccaggctccattcc 136
||||||||||||||||||||||| ||||||
Sbjct: 64 ctaaatgattctcggaccaggcttcattcc 93
>RF00075;mir-166;AC140029.19/70482-70585 3880:Medicago truncatula
(barrel medic)
Length = 104
Score = 48.1 bits (24), Expect = 3e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 5 gttgagaggaacgctgtctgggtcgaggtcatggag 40
||||||||||||| ||||||| ||||||| ||||||
Sbjct: 1 gttgagaggaacgttgtctggctcgaggtgatggag 36
>RF00075;mir-166;AL590346.1/40100-40217 3702:Arabidopsis thaliana
(thale cress)
Length = 118
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 106 cctaaatgattctcggaccaggctccattcc 136
|||| ||||||||||||||||||| ||||||
Sbjct: 81 cctagatgattctcggaccaggcttcattcc 111
