miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00640;MIR167_1;AARH01033933.1/298-187 3694:Populus trichocarpa
Length = 112
Score = 208 bits (105), Expect = 1e-53
Identities = 105/105 (100%)
Strand = Plus / Plus
Query: 1 agggaaaaggtgaagctgccagcatgatctatctttggttagagaaggatagaagcgaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 agggaaaaggtgaagctgccagcatgatctatctttggttagagaaggatagaagcgaaa 63
Query: 61 gaactaaccctagctaggtcatgctctgacagcctcactccttcc 105
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 gaactaaccctagctaggtcatgctctgacagcctcactccttcc 108
>RF00640;MIR167_1;AARH01001059.1/160212-160110 3694:Populus
trichocarpa
Length = 103
Score = 113 bits (57), Expect = 5e-25
Identities = 92/105 (87%), Gaps = 9/105 (8%)
Strand = Plus / Plus
Query: 1 agggaaaaggtgaagctgccagcatgatctatctttggttagagaaggatagaagcgaaa 60
|||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 4 agggaaaaagtgaagctgccagcatgatctatctttggttagagaa---------agaaa 54
Query: 61 gaactaaccctagctaggtcatgctctgacagcctcactccttcc 105
| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 55 ggactaaccctagctaggtcatgctgtgacagcctcactccttcc 99
>RF00640;MIR167_1;AASG02000565.1/57130-57272 3988:Ricinus communis
(castor bean)
Length = 143
Score = 83.8 bits (42), Expect = 4e-16
Identities = 42/42 (100%)
Strand = Plus / Plus
Query: 64 ctaaccctagctaggtcatgctctgacagcctcactccttcc 105
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98 ctaaccctagctaggtcatgctctgacagcctcactccttcc 139
Score = 75.8 bits (38), Expect = 1e-13
Identities = 41/42 (97%)
Strand = Plus / Plus
Query: 1 agggaaaaggtgaagctgccagcatgatctatctttggttag 42
||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 4 agggaaaaggtgaagctgccagcatgatctagctttggttag 45
>RF00640;MIR167_1;AP006429.1/12775-12654 34305:Lotus japonicus
Length = 122
Score = 75.8 bits (38), Expect = 1e-13
Identities = 44/46 (95%)
Strand = Plus / Plus
Query: 1 agggaaaaggtgaagctgccagcatgatctatctttggttagagaa 46
|||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct: 4 agggaaaaagtgaagctgccagcatgatctagctttggttagagaa 49
>RF00640;MIR167_1;CAAP02000379.1/19428-19545 29760:Vitis vinifera
Length = 118
Score = 75.8 bits (38), Expect = 1e-13
Identities = 41/42 (97%)
Strand = Plus / Plus
Query: 64 ctaaccctagctaggtcatgctctgacagcctcactccttcc 105
||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 73 ctaaccctagctaggtcatgccctgacagcctcactccttcc 114
>RF00640;MIR167_1;ABIM01012099.1/4885-4992 3649:Carica papaya
(papaya)
Length = 108
Score = 73.8 bits (37), Expect = 4e-13
Identities = 40/41 (97%)
Strand = Plus / Plus
Query: 65 taaccctagctaggtcatgctctgacagcctcactccttcc 105
||||||||| |||||||||||||||||||||||||||||||
Sbjct: 64 taaccctagttaggtcatgctctgacagcctcactccttcc 104
Score = 50.1 bits (25), Expect = 6e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 3 ggaaaaggtgaagctgccagcatgatcta 31
|||||| ||||||||||||||||||||||
Sbjct: 6 ggaaaaagtgaagctgccagcatgatcta 34
>RF00640;MIR167_1;EU548982.1/151-266 3702:Arabidopsis thaliana
(thale cress)
Length = 116
Score = 71.9 bits (36), Expect = 2e-12
Identities = 39/40 (97%)
Strand = Plus / Plus
Query: 66 aaccctagctaggtcatgctctgacagcctcactccttcc 105
||||| ||||||||||||||||||||||||||||||||||
Sbjct: 73 aacccaagctaggtcatgctctgacagcctcactccttcc 112
Score = 65.9 bits (33), Expect = 1e-10
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 1 agggaaaaggtgaagctgccagcatgatctatctttggtta 41
|||||| | ||||||||||||||||||||||||||||||||
Sbjct: 4 agggaacaagtgaagctgccagcatgatctatctttggtta 44
>RF00640;MIR167_1;EU084500.1/298-436 260130:Acca sellowiana
Length = 139
Score = 58.0 bits (29), Expect = 2e-08
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 65 taaccctagctaggtcatgctctgacagcctcactccttcc 105
||||||||||||||||||||| |||||||||||| |||||
Sbjct: 95 taaccctagctaggtcatgctgcgacagcctcacttcttcc 135
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 gtgaagctgccagcatgatcta 31
||||||||||||||||||||||
Sbjct: 13 gtgaagctgccagcatgatcta 34
>RF00640;MIR167_1;AC174291.12/5719-6052 3880:Medicago truncatula
(barrel medic)
Length = 334
Score = 54.0 bits (27), Expect = 4e-07
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 3 ggaaaaggtgaagctgccagcatgatctatctttggtta 41
|||||| |||||||||||||||||||||| ||||||||
Sbjct: 6 ggaaaaagtgaagctgccagcatgatctaggtttggtta 44
>RF00640;MIR167_1;AC225328.1/5014-5119 4081:Solanum lycopersicum
Length = 106
Score = 54.0 bits (27), Expect = 4e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 75 taggtcatgctctgacagcctcactccttcc 105
|||||||||||| ||||||||||||||||||
Sbjct: 72 taggtcatgctcggacagcctcactccttcc 102
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 gtgaagctgccagcatgatcta 31
||||||||||||||||||||||
Sbjct: 13 gtgaagctgccagcatgatcta 34
>RF00640;MIR167_1;ABXC01005647.1/66563-66713 4558:Sorghum bicolor
(sorghum)
Length = 151
Score = 54.0 bits (27), Expect = 4e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 10 gtgaagctgccagcatgatctatctttggtt 40
|||||||||||||||||||||| ||||||||
Sbjct: 13 gtgaagctgccagcatgatctagctttggtt 43
>RF00640;MIR167_1;AC210447.1/128234-128320 4538:Oryza glaberrima
(African rice)
Length = 87
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 8 aggtgaagctgccagcatgatct 30
|||||||||||||||||||||||
Sbjct: 11 aggtgaagctgccagcatgatct 33
>RF00640;MIR167_1;BT062276.1/99-327 4577:Zea mays
Length = 229
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 ggtgaagctgccagcatgatct 30
||||||||||||||||||||||
Sbjct: 12 ggtgaagctgccagcatgatct 33
>RF00640;MIR167_1;EU944277.1/110-337 4577:Zea mays
Length = 228
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 ggtgaagctgccagcatgatct 30
||||||||||||||||||||||
Sbjct: 12 ggtgaagctgccagcatgatct 33
>RF00640;MIR167_1;EU947925.1/384-504 4577:Zea mays
Length = 121
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 gtgaagctgccagcatgatcta 31
||||||||||||||||||||||
Sbjct: 13 gtgaagctgccagcatgatcta 34
>RF00640;MIR167_1;ABXC01000087.1/205849-206071 4558:Sorghum
bicolor (sorghum)
Length = 223
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 gtgaagctgccagcatgatcta 31
||||||||||||||||||||||
Sbjct: 13 gtgaagctgccagcatgatcta 34
>RF00640;MIR167_1;ABXC01005647.1/68869-69033 4558:Sorghum bicolor
(sorghum)
Length = 165
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 ggtgaagctgccagcatgatct 30
||||||||||||||||||||||
Sbjct: 12 ggtgaagctgccagcatgatct 33
>RF00640;MIR167_1;ABXC01000050.1/9782-9902 4558:Sorghum bicolor
(sorghum)
Length = 121
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 gtgaagctgccagcatgatcta 31
||||||||||||||||||||||
Sbjct: 13 gtgaagctgccagcatgatcta 34
>RF00640;MIR167_1;AL928781.4/79791-79930 4530:Oryza sativa (rice)
Length = 140
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 gtgaagctgccagcatgatcta 31
||||||||||||||||||||||
Sbjct: 13 gtgaagctgccagcatgatcta 34
>RF00640;MIR167_1;AC092076.7/52843-52692 39947:Oryza sativa
Japonica Group
Length = 152
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 gtgaagctgccagcatgatcta 31
||||||||||||||||||||||
Sbjct: 13 gtgaagctgccagcatgatcta 34
>RF00640;MIR167_1;AAAA02011018.1/78132-77981 39946:Oryza sativa
Indica Group
Length = 152
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 gtgaagctgccagcatgatcta 31
||||||||||||||||||||||
Sbjct: 13 gtgaagctgccagcatgatcta 34
>RF00640;MIR167_1;CT828788.1/88-212 39946:Oryza sativa Indica
Group
Length = 125
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 ggtgaagctgccagcatgatct 30
||||||||||||||||||||||
Sbjct: 12 ggtgaagctgccagcatgatct 33
