miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00640;MIR167_1;AARH01008931.1/3492-3395 3694:Populus
trichocarpa
Length = 98
Score = 180 bits (91), Expect = 2e-45
Identities = 91/91 (100%)
Strand = Plus / Plus
Query: 1 cactagtagttgaagctgccagcatgatctgaactttccttaattttcctatacgggaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 cactagtagttgaagctgccagcatgatctgaactttccttaattttcctatacgggaaa 63
Query: 61 gactagatcatgtggtagtttcatctattga 91
|||||||||||||||||||||||||||||||
Sbjct: 64 gactagatcatgtggtagtttcatctattga 94
>RF00640;MIR167_1;AC209507.1/126147-126250 4081:Solanum
lycopersicum
Length = 104
Score = 65.9 bits (33), Expect = 8e-11
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 1 cactagtagttgaagctgccagcatgatctgaactttcctt 41
|||||| ||||||||||||||||||||||| ||||||||||
Sbjct: 4 cactagcagttgaagctgccagcatgatctaaactttcctt 44
>RF00640;MIR167_1;ABIM01012099.1/6617-6710 3649:Carica papaya
(papaya)
Length = 94
Score = 60.0 bits (30), Expect = 5e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 8 agttgaagctgccagcatgatctgaactttcctt 41
||||||||||||||||||||||| ||||||||||
Sbjct: 11 agttgaagctgccagcatgatctaaactttcctt 44
>RF00640;MIR167_1;AC225328.1/13792-13888 4081:Solanum lycopersicum
Length = 97
Score = 58.0 bits (29), Expect = 2e-08
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 1 cactagtagttgaagctgccagcatgatctgaacttt 37
|||||| ||||||||||||||||||||||| ||||||
Sbjct: 4 cactagcagttgaagctgccagcatgatctaaacttt 40
>RF00640;MIR167_1;ABIM01018604.1/478-580 3649:Carica papaya
(papaya)
Length = 103
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 8 agttgaagctgccagcatgatctgaacttt 37
||||||||||||||||||||||||| ||||
Sbjct: 11 agttgaagctgccagcatgatctgagcttt 40
>RF00640;MIR167_1;AARH01002853.1/45908-46003 3694:Populus
trichocarpa
Length = 96
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 1 cactagtagttgaagctgccagcatgatct 30
|||||| |||||||||||||||||||||||
Sbjct: 4 cactagcagttgaagctgccagcatgatct 33
>RF00640;MIR167_1;AARH01001059.1/157614-157519 3694:Populus
trichocarpa
Length = 96
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 1 cactagtagttgaagctgccagcatgatct 30
|||||| |||||||||||||||||||||||
Sbjct: 4 cactagcagttgaagctgccagcatgatct 33
>RF00640;MIR167_1;ABXC01000844.1/72139-72006 4558:Sorghum bicolor
(sorghum)
Length = 134
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 3 ctagtagttgaagctgccagcatgatctga 32
||||||| ||||||||||||||||||||||
Sbjct: 6 ctagtagctgaagctgccagcatgatctga 35
>RF00640;MIR167_1;EU532400.1/147-239 3634:Gossypium barbadense
(sea-island cotton)
Length = 93
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 8 agttgaagctgccagcatgatctgaactt 36
||||||||||||||||||||||| |||||
Sbjct: 11 agttgaagctgccagcatgatctaaactt 39
>RF00640;MIR167_1;AASG02001065.1/6152-6064 3988:Ricinus communis
(castor bean)
Length = 89
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 7 tagttgaagctgccagcatgatctg 31
|||||||||||||||||||||||||
Sbjct: 10 tagttgaagctgccagcatgatctg 34
>RF00640;MIR167_1;BABK01022869.1/1081-990 34305:Lotus japonicus
Length = 92
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 8 agttgaagctgccagcatgatctgaactt 36
||||||||||||||||||||||| |||||
Sbjct: 11 agttgaagctgccagcatgatcttaactt 39
>RF00640;MIR167_1;CAAP02000793.1/41456-41548 29760:Vitis vinifera
Length = 93
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 8 agttgaagctgccagcatgatctgaactt 36
||||||||||||||||||||||| |||||
Sbjct: 11 agttgaagctgccagcatgatctaaactt 39
>RF00640;MIR167_1;CAAP02000379.1/24621-24714 29760:Vitis vinifera
Length = 94
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 8 agttgaagctgccagcatgatctgaactt 36
||||||||||||||||||||||| |||||
Sbjct: 11 agttgaagctgccagcatgatctcaactt 39
>RF00640;MIR167_1;CAAP02001791.1/44208-44309 29760:Vitis vinifera
Length = 102
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 56 ggaaagactagatcatgtggtagtttca 83
|||||||||||||||||||| |||||||
Sbjct: 63 ggaaagactagatcatgtggcagtttca 90
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 8 agttgaagctgccagcatgatct 30
|||||||||||||||||||||||
Sbjct: 11 agttgaagctgccagcatgatct 33
>RF00640;MIR167_1;ABXC01002438.1/140052-139788 4558:Sorghum
bicolor (sorghum)
Length = 265
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 9 gttgaagctgccagcatgatctga 32
||||||||||||||||||||||||
Sbjct: 12 gttgaagctgccagcatgatctga 35
>RF00640;MIR167_1;AARH01004314.1/38692-38599 3694:Populus
trichocarpa
Length = 94
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 8 agttgaagctgccagcatgatct 30
|||||||||||||||||||||||
Sbjct: 11 agttgaagctgccagcatgatct 33
>RF00640;MIR167_1;AARH01012195.1/26948-26514 3694:Populus
trichocarpa
Length = 435
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 gttgaagctgccagcatgatctg 31
|||||||||||||||||||||||
Sbjct: 12 gttgaagctgccagcatgatctg 34
>RF00640;MIR167_1;AC212802.1/77650-78085 3694:Populus trichocarpa
Length = 436
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 gttgaagctgccagcatgatctg 31
|||||||||||||||||||||||
Sbjct: 12 gttgaagctgccagcatgatctg 34
>RF00640;MIR167_1;AASG02005785.1/15088-15180 3988:Ricinus communis
(castor bean)
Length = 93
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 8 agttgaagctgccagcatgatct 30
|||||||||||||||||||||||
Sbjct: 11 agttgaagctgccagcatgatct 33
>RF00640;MIR167_1;BABK01002345.1/2496-2649 34305:Lotus japonicus
Length = 154
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 gttgaagctgccagcatgatctg 31
|||||||||||||||||||||||
Sbjct: 12 gttgaagctgccagcatgatctg 34
>RF00640;MIR167_1;CAAP02000801.1/49293-49646 29760:Vitis vinifera
Length = 354
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 gttgaagctgccagcatgatctg 31
|||||||||||||||||||||||
Sbjct: 12 gttgaagctgccagcatgatctg 34
>RF00640;MIR167_1;ABXC01000720.1/131669-131557 4558:Sorghum
bicolor (sorghum)
Length = 113
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tgaagctgccagcatgatctgaa 33
|||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctgaa 36
>RF00640;MIR167_1;ABXC01006864.1/41201-41318 4558:Sorghum bicolor
(sorghum)
Length = 118
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 gttgaagctgccagcatgatctg 31
|||||||||||||||||||||||
Sbjct: 12 gttgaagctgccagcatgatctg 34
>RF00640;MIR167_1;AC210447.1/128234-128320 4538:Oryza glaberrima
(African rice)
Length = 87
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tgaagctgccagcatgatctgaa 33
|||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctgaa 36
>RF00640;MIR167_1;AAAA02003942.1/33918-33790 39946:Oryza sativa
Indica Group
Length = 129
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 11 tgaagctgccagcatgatctgaacttt 37
|||||||||||||||||||||| ||||
Sbjct: 14 tgaagctgccagcatgatctgatcttt 40
>RF00640;MIR167_1;AASG02013372.1/3243-2901 3988:Ricinus communis
(castor bean)
Length = 343
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 ttgaagctgccagcatgatctg 31
||||||||||||||||||||||
Sbjct: 13 ttgaagctgccagcatgatctg 34
>RF00640;MIR167_1;AASG02013390.1/4624-4525 3988:Ricinus communis
(castor bean)
Length = 100
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 1 cactagtagttgaagctgccagcatgatct 30
|||||| |||| ||||||||||||||||||
Sbjct: 4 cactagcagttaaagctgccagcatgatct 33
>RF00640;MIR167_1;AC225328.1/5014-5119 4081:Solanum lycopersicum
Length = 106
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 11 tgaagctgccagcatgatctgaactt 36
|||||||||||||||||||| |||||
Sbjct: 14 tgaagctgccagcatgatctaaactt 39
>RF00640;MIR167_1;EU952646.1/178-293 4577:Zea mays
Length = 116
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 ttgaagctgccagcatgatctg 31
||||||||||||||||||||||
Sbjct: 13 ttgaagctgccagcatgatctg 34
>RF00640;MIR167_1;ABXC01000326.1/41757-41921 4558:Sorghum bicolor
(sorghum)
Length = 165
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgaagctgccagcatgatctga 32
||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctga 35
>RF00640;MIR167_1;ABXC01002259.1/3174-3066 4558:Sorghum bicolor
(sorghum)
Length = 109
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgaagctgccagcatgatctga 32
||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctga 35
>RF00640;MIR167_1;ABXC01005647.1/68869-69033 4558:Sorghum bicolor
(sorghum)
Length = 165
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgaagctgccagcatgatctga 32
||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctga 35
>RF00640;MIR167_1;AP003800.3/19613-19499 39947:Oryza sativa
Japonica Group
Length = 115
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgaagctgccagcatgatctga 32
||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctga 35
>RF00640;MIR167_1;AY551235.1/11-128 4530:Oryza sativa (rice)
Length = 118
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgaagctgccagcatgatctga 32
||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctga 35
>RF00640;MIR167_1;CT828788.1/88-212 39946:Oryza sativa Indica
Group
Length = 125
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgaagctgccagcatgatctga 32
||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctga 35
