miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>52000_ptc-miRf10178-akr:pmrd
Length = 95
Score = 180 bits (91), Expect = 1e-46
Identities = 91/91 (100%)
Strand = Plus / Plus
Query: 1 cgctattagttgaagctgccaacatgatctgagctttccttaattttcctatacaggaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 cgctattagttgaagctgccaacatgatctgagctttccttaattttcctatacaggaaa 61
Query: 61 gactagatcatgtggcagtttcacctattga 91
|||||||||||||||||||||||||||||||
Sbjct: 62 gactagatcatgtggcagtttcacctattga 92
>51649_ptc-miR167h:pmrd
Length = 91
Score = 180 bits (91), Expect = 1e-46
Identities = 91/91 (100%)
Strand = Plus / Plus
Query: 1 cgctattagttgaagctgccaacatgatctgagctttccttaattttcctatacaggaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cgctattagttgaagctgccaacatgatctgagctttccttaattttcctatacaggaaa 60
Query: 61 gactagatcatgtggcagtttcacctattga 91
|||||||||||||||||||||||||||||||
Sbjct: 61 gactagatcatgtggcagtttcacctattga 91
>51646_ptc-miR167e:pmrd
Length = 91
Score = 129 bits (65), Expect = 4e-31
Identities = 80/85 (94%)
Strand = Plus / Plus
Query: 7 tagttgaagctgccaacatgatctgagctttccttaattttcctatacaggaaagactag 66
||||||||||||||| |||||||||| ||||||||||||||||||||| |||||||||||
Sbjct: 7 tagttgaagctgccagcatgatctgaactttccttaattttcctatacgggaaagactag 66
Query: 67 atcatgtggcagtttcacctattga 91
||||||||| ||||||| |||||||
Sbjct: 67 atcatgtggtagtttcatctattga 91
>54798_vvi-miR167b:pmrd
Length = 99
Score = 67.9 bits (34), Expect = 1e-12
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 54 caggaaagactagatcatgtggcagtttcacctattga 91
||||||||||||||||||||||||||||||||| ||||
Sbjct: 58 caggaaagactagatcatgtggcagtttcacctgttga 95
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 8 agttgaagctgccaacatgatctgagcttt 37
|||||||||||||| |||||||| ||||||
Sbjct: 8 agttgaagctgccagcatgatctaagcttt 37
>48678_lja-miR167:pmrd
Length = 108
Score = 54.0 bits (27), Expect = 2e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 7 tagttgaagctgccaacatgatctgagctttcctt 41
||||||||||||||| |||||||||||||| ||||
Sbjct: 17 tagttgaagctgccagcatgatctgagcttacctt 51
>48420_cle-miR167:pmrd
Length = 96
Score = 54.0 bits (27), Expect = 2e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 7 tagttgaagctgccaacatgatctgagctttcctt 41
||||||||||||||| |||||||||| ||||||||
Sbjct: 7 tagttgaagctgccagcatgatctgaactttcctt 41
>51648_ptc-miR167g:pmrd
Length = 86
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 55 aggaaagactagatcatgtggcagtttcacct 86
|||||||| ||||||||||||||||||||||
Sbjct: 50 aggaaagaacagatcatgtggcagtttcacct 81
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 3 ctattagttgaagctgccaacatgatct 30
|||| |||||||||||||| ||||||||
Sbjct: 3 ctatcagttgaagctgccagcatgatct 30
>54801_vvi-miR167e:pmrd
Length = 90
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 65 agatcatgtggcagtttcacct 86
||||||||||||||||||||||
Sbjct: 60 agatcatgtggcagtttcacct 81
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 3 ctattagttgaagctgccaacatgatct 30
|||| |||||||||||||| ||||||||
Sbjct: 3 ctatcagttgaagctgccagcatgatct 30
>54545_sly-miR167:pmrd
Length = 116
Score = 44.1 bits (22), Expect = 2e-05
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 8 agttgaagctgccaacatgatctgagctttcctt 41
|||||||||||||| |||||||| | ||||||||
Sbjct: 16 agttgaagctgccagcatgatctaaactttcctt 49
>51647_ptc-miR167f:pmrd
Length = 87
Score = 44.1 bits (22), Expect = 2e-05
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 3 ctattagttgaagctgccaacatgatctgagctttcct 40
|||| |||||||||||||| |||||||| ||| |||||
Sbjct: 3 ctatcagttgaagctgccagcatgatcttagccttcct 40
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 65 agatcatgtggcagtttcacct 86
||||||||||||||||||||||
Sbjct: 61 agatcatgtggcagtttcacct 82
>54989_zma-miR167l:pmrd
Length = 80
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 11 tgaagctgccaacatgatctgagctttc 38
||||||||||| |||||||||| |||||
Sbjct: 1 tgaagctgccagcatgatctgatctttc 28
>54983_zma-miR167f:pmrd
Length = 119
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 11 tgaagctgccaacatgatctgagctttc 38
||||||||||| |||||||||| |||||
Sbjct: 21 tgaagctgccagcatgatctgatctttc 48
