miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>51651_ptc-miR168b:pmrd
Length = 136
Score = 270 bits (136), Expect = 2e-73
Identities = 136/136 (100%)
Strand = Plus / Plus
Query: 1 ggtctctaattcgcttggtgcaggtcgggaactgattcggcgatttgattgccagatggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggtctctaattcgcttggtgcaggtcgggaactgattcggcgatttgattgccagatggc 60
Query: 61 taaacacgattggctgtgaggcaaattataaaaagaaagagaattggatcccgccttgca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 taaacacgattggctgtgaggcaaattataaaaagaaagagaattggatcccgccttgca 120
Query: 121 tcaactgaatcggaga 136
||||||||||||||||
Sbjct: 121 tcaactgaatcggaga 136
>54374_pts-miR168a:pmrd
Length = 118
Score = 218 bits (110), Expect = 8e-58
Identities = 116/118 (98%)
Strand = Plus / Plus
Query: 11 tcgcttggtgcaggtcgggaactgattcggcgatttgattgccagatggctaaacacgat 70
|||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcgggaactgattctgcgatttcattgccagatggctaaacacgat 60
Query: 71 tggctgtgaggcaaattataaaaagaaagagaattggatcccgccttgcatcaactga 128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tggctgtgaggcaaattataaaaagaaagagaattggatcccgccttgcatcaactga 118
>54366_ptr-miR168:pmrd
Length = 118
Score = 218 bits (110), Expect = 8e-58
Identities = 116/118 (98%)
Strand = Plus / Plus
Query: 11 tcgcttggtgcaggtcgggaactgattcggcgatttgattgccagatggctaaacacgat 70
|||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcgggaactgattctgcgatttcattgccagatggctaaacacgat 60
Query: 71 tggctgtgaggcaaattataaaaagaaagagaattggatcccgccttgcatcaactga 128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tggctgtgaggcaaattataaaaagaaagagaattggatcccgccttgcatcaactga 118
>51650_ptc-miR168a:pmrd
Length = 160
Score = 113 bits (57), Expect = 3e-26
Identities = 60/61 (98%)
Strand = Plus / Plus
Query: 1 ggtctctaattcgcttggtgcaggtcgggaactgattcggcgatttgattgccagatggc 60
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggtctctgattcgcttggtgcaggtcgggaactgattcggcgatttgattgccagatggc 60
Query: 61 t 61
|
Sbjct: 61 t 61
Score = 69.9 bits (35), Expect = 5e-13
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 101 gaattggatcccgccttgcatcaactgaatcggag 135
|||||||||||||||||||||||||||||||||||
Sbjct: 125 gaattggatcccgccttgcatcaactgaatcggag 159
>54375_pts-miR168b:pmrd
Length = 140
Score = 93.7 bits (47), Expect = 3e-20
Identities = 50/51 (98%)
Strand = Plus / Plus
Query: 11 tcgcttggtgcaggtcgggaactgattcggcgatttgattgccagatggct 61
||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 1 tcgcttggtgcaggtcgggaactgattcggcgatttgattgccagctggct 51
Score = 56.0 bits (28), Expect = 7e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 101 gaattggatcccgccttgcatcaactga 128
||||||||||||||||||||||||||||
Sbjct: 113 gaattggatcccgccttgcatcaactga 140
>54388_rco-miR168:pmrd
Length = 156
Score = 73.8 bits (37), Expect = 3e-14
Identities = 37/37 (100%)
Strand = Plus / Plus
Query: 1 ggtctctaattcgcttggtgcaggtcgggaactgatt 37
|||||||||||||||||||||||||||||||||||||
Sbjct: 9 ggtctctaattcgcttggtgcaggtcgggaactgatt 45
Score = 67.9 bits (34), Expect = 2e-12
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 95 gaaagagaattggatcccgccttgcatcaactgaatcg 132
||||| ||||||||||||||||||||||||||||||||
Sbjct: 104 gaaagtgaattggatcccgccttgcatcaactgaatcg 141
>48560_gma-miR168:pmrd
Length = 125
Score = 69.9 bits (35), Expect = 5e-13
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 101 gaattggatcccgccttgcatcaactgaatcggag 135
|||||||||||||||||||||||||||||||||||
Sbjct: 79 gaattggatcccgccttgcatcaactgaatcggag 113
Score = 63.9 bits (32), Expect = 3e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 1 ggtctctaattcgcttggtgcaggtcgggaac 32
||||||||||||||||||||||||||||||||
Sbjct: 9 ggtctctaattcgcttggtgcaggtcgggaac 40
>54802_vvi-miR168:pmrd
Length = 132
Score = 63.9 bits (32), Expect = 3e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 1 ggtctctaattcgcttggtgcaggtcgggaac 32
||||||||||||||||||||||||||||||||
Sbjct: 1 ggtctctaattcgcttggtgcaggtcgggaac 32
Score = 60.0 bits (30), Expect = 4e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 107 gatcccgccttgcatcaactgaatcggaga 136
||||||||||||||||||||||||||||||
Sbjct: 99 gatcccgccttgcatcaactgaatcggaga 128
>47339_ath-miRf10239-akr:pmrd
Length = 129
Score = 63.9 bits (32), Expect = 3e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 103 attggatcccgccttgcatcaactgaatcgga 134
||||||||||||||||||||||||||||||||
Sbjct: 91 attggatcccgccttgcatcaactgaatcgga 122
Score = 50.1 bits (25), Expect = 4e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 9 attcgcttggtgcaggtcgggaactgattcggc 41
|||||||||||||||||||||||| |||||||
Sbjct: 11 attcgcttggtgcaggtcgggaaccaattcggc 43
>46957_ath-miR168a:pmrd
Length = 138
Score = 63.9 bits (32), Expect = 3e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 103 attggatcccgccttgcatcaactgaatcgga 134
||||||||||||||||||||||||||||||||
Sbjct: 96 attggatcccgccttgcatcaactgaatcgga 127
Score = 50.1 bits (25), Expect = 4e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 9 attcgcttggtgcaggtcgggaactgattcggc 41
|||||||||||||||||||||||| |||||||
Sbjct: 16 attcgcttggtgcaggtcgggaaccaattcggc 48
>46958_ath-miR168b:pmrd
Length = 124
Score = 58.0 bits (29), Expect = 2e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 9 attcgcttggtgcaggtcgggaactgatt 37
|||||||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaactgatt 45
>48349_bna-miR168:pmrd
Length = 133
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 11 tcgcttggtgcaggtcgggaactgatt 37
|||||||||||||||||||||||||||
Sbjct: 18 tcgcttggtgcaggtcgggaactgatt 44
>55000_zma-miR168b:pmrd
Length = 104
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 106 ggatcccgccttgcatcaactgaatcggag 135
||||||||||||||||||| ||||||||||
Sbjct: 63 ggatcccgccttgcatcaagtgaatcggag 92
>46959_ath-miR168m:pmrd
Length = 104
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 103 attggatcccgccttgcatcaactga 128
||||||||||||||||||||||||||
Sbjct: 79 attggatcccgccttgcatcaactga 104
Score = 46.1 bits (23), Expect = 7e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 11 tcgcttggtgcaggtcgggaactgattcggc 41
|||||||||||||||||||||| |||||||
Sbjct: 1 tcgcttggtgcaggtcgggaaccaattcggc 31
>54546_sly-miR168:pmrd
Length = 145
Score = 48.1 bits (24), Expect = 2e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 11 tcgcttggtgcaggtcgggaactgattcggcg 42
|||||||||||||||||||| || ||||||||
Sbjct: 1 tcgcttggtgcaggtcgggacctcattcggcg 32
>48649_hte-miR168:pmrd
Length = 140
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 tcgcttggtgcaggtcgggaactg 34
||||||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcgggaactg 24
>54999_zma-miR168a:pmrd
Length = 104
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 106 ggatcccgccttgcatcaactgaatcggag 135
||||||||||||||| ||| ||||||||||
Sbjct: 63 ggatcccgccttgcaccaagtgaatcggag 92
>54637_sof-miR168b:pmrd
Length = 103
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 106 ggatcccgccttgcatcaactgaatcggag 135
||||||||||||||| ||| ||||||||||
Sbjct: 62 ggatcccgccttgcaccaagtgaatcggag 91
>54636_sof-miR168a:pmrd
Length = 104
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 106 ggatcccgccttgcatcaactgaatcggag 135
||||||||||||||| ||| ||||||||||
Sbjct: 63 ggatcccgccttgcaccaagtgaatcggag 92
>48873_osa-miR168a:pmrd
Length = 87
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 106 ggatcccgccttgcatcaactgaatcggag 135
||||||||||||||| ||| ||||||||||
Sbjct: 55 ggatcccgccttgcaccaagtgaatcggag 84
>48872_osa-miR168a:pmrd
Length = 87
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 106 ggatcccgccttgcatcaactgaatcggag 135
||||||||||||||| ||| ||||||||||
Sbjct: 55 ggatcccgccttgcaccaagtgaatcggag 84
>48871_osa-miR168a:pmrd
Length = 87
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 106 ggatcccgccttgcatcaactgaatcggag 135
||||||||||||||| ||| ||||||||||
Sbjct: 55 ggatcccgccttgcaccaagtgaatcggag 84
>54665_stu-miR168:pmrd
Length = 133
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 104 ttggatcccgccttgcatcaactga 128
|||| ||||||||||||||||||||
Sbjct: 109 ttgggtcccgccttgcatcaactga 133
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 tcgcttggtgcaggtcggga 30
||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcggga 20
