miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>53746_ptc-miRf11924-akr:pmrd
Length = 138
Score = 212 bits (107), Expect = 4e-56
Identities = 107/107 (100%)
Strand = Plus / Plus
Query: 1 cttgtttggtagccaaggacgacttgcccaccaccatctcagttgggtccaatatattac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15 cttgtttggtagccaaggacgacttgcccaccaccatctcagttgggtccaatatattac 74
Query: 61 tgggcaccttccatttggttttgggcaagcaccttggctagctgaca 107
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75 tgggcaccttccatttggttttgggcaagcaccttggctagctgaca 121
>51654_ptc-miR169ab:pmrd
Length = 107
Score = 212 bits (107), Expect = 4e-56
Identities = 107/107 (100%)
Strand = Plus / Plus
Query: 1 cttgtttggtagccaaggacgacttgcccaccaccatctcagttgggtccaatatattac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cttgtttggtagccaaggacgacttgcccaccaccatctcagttgggtccaatatattac 60
Query: 61 tgggcaccttccatttggttttgggcaagcaccttggctagctgaca 107
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tgggcaccttccatttggttttgggcaagcaccttggctagctgaca 107
>53831_ptc-miRf12009-akr:pmrd
Length = 138
Score = 204 bits (103), Expect = 9e-54
Identities = 106/107 (99%)
Strand = Plus / Plus
Query: 1 cttgtttggtagccaaggacgacttgcccaccaccatctcagttgggtccaatatattac 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 15 cttgtttggtagccaaggacgacttgcccaccaccatcttagttgggtccaatatattac 74
Query: 61 tgggcaccttccatttggttttgggcaagcaccttggctagctgaca 107
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75 tgggcaccttccatttggttttgggcaagcaccttggctagctgaca 121
>51657_ptc-miR169ae:pmrd
Length = 107
Score = 204 bits (103), Expect = 9e-54
Identities = 106/107 (99%)
Strand = Plus / Plus
Query: 1 cttgtttggtagccaaggacgacttgcccaccaccatctcagttgggtccaatatattac 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 1 cttgtttggtagccaaggacgacttgcccaccaccatcttagttgggtccaatatattac 60
Query: 61 tgggcaccttccatttggttttgggcaagcaccttggctagctgaca 107
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tgggcaccttccatttggttttgggcaagcaccttggctagctgaca 107
>51658_ptc-miR169af:pmrd
Length = 107
Score = 192 bits (97), Expect = 4e-50
Identities = 103/105 (98%)
Strand = Plus / Plus
Query: 3 tgtttggtagccaaggacgacttgcccaccaccatctcagttgggtccaatatattactg 62
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct: 3 tgtttggtagccaaggacgacttgcccaccaccatcttagttgggtccagtatattactg 62
Query: 63 ggcaccttccatttggttttgggcaagcaccttggctagctgaca 107
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63 ggcaccttccatttggttttgggcaagcaccttggctagctgaca 107
>51680_ptc-miR169w:pmrd
Length = 109
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 3 tgtttggtagccaaggacgacttgcccac 31
||||||||||||||||| |||||||||||
Sbjct: 3 tgtttggtagccaaggatgacttgcccac 31
>51679_ptc-miR169v:pmrd
Length = 110
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 3 tgtttggtagccaaggacgacttgcccac 31
||||||||||||||||| |||||||||||
Sbjct: 3 tgtttggtagccaaggatgacttgcccac 31
>51656_ptc-miR169ad:pmrd
Length = 101
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 3 tgtttggtagccaaggacgacttgcccac 31
|||| ||||||||||||||||||||||||
Sbjct: 3 tgttcggtagccaaggacgacttgcccac 31
>52726_ptc-miRf10904-akr:pmrd
Length = 132
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 1 cttgtttggtagccaaggacgacttgcc 28
||||||||||||||||||| ||||||||
Sbjct: 6 cttgtttggtagccaaggatgacttgcc 33
>51670_ptc-miR169m:pmrd
Length = 119
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 1 cttgtttggtagccaaggacgacttgcc 28
||||||||||||||||||| ||||||||
Sbjct: 2 cttgtttggtagccaaggatgacttgcc 29
>51668_ptc-miR169k:pmrd
Length = 203
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 1 cttgtttggtagccaaggacgacttgcc 28
||||||||||||||||||| ||||||||
Sbjct: 2 cttgtttggtagccaaggatgacttgcc 29
>51666_ptc-miR169i:pmrd
Length = 123
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 1 cttgtttggtagccaaggacgacttgcc 28
||||||||||||||||||| ||||||||
Sbjct: 2 cttgtttggtagccaaggatgacttgcc 29
>48487_ghb-miR169a:pmrd
Length = 189
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 1 cttgtttggtagccaaggacgacttgcc 28
||||||||||||||||||| ||||||||
Sbjct: 41 cttgtttggtagccaaggatgacttgcc 68
>51906_ptc-miRf10084-akr:pmrd
Length = 103
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 gtagccaaggacgacttgcccac 31
|||||||||||||||||||||||
Sbjct: 5 gtagccaaggacgacttgcccac 27
>51655_ptc-miR169ac:pmrd
Length = 107
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 gtagccaaggacgacttgcccac 31
|||||||||||||||||||||||
Sbjct: 9 gtagccaaggacgacttgcccac 31
>51678_ptc-miR169u:pmrd
Length = 122
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 8 ggtagccaaggacgacttgcc 28
|||||||||||||||||||||
Sbjct: 9 ggtagccaaggacgacttgcc 29
>51675_ptc-miR169r:pmrd
Length = 119
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 4 gtttggtagccaaggacgacttgcc 28
|||||||||||||||| ||||||||
Sbjct: 5 gtttggtagccaaggatgacttgcc 29
>54548_sly-miR169b:pmrd
Length = 205
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 5 tttggtagccaaggacgacttgcc 28
||||||||||||||| ||||||||
Sbjct: 166 tttggtagccaaggatgacttgcc 189
>54440_sbi-miR169d:pmrd
Length = 125
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 5 tttggtagccaaggacgacttgcc 28
||||||||||||||| ||||||||
Sbjct: 16 tttggtagccaaggatgacttgcc 39
>54439_sbi-miR169c:pmrd
Length = 126
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 5 tttggtagccaaggacgacttgcc 28
||||||||||||||| ||||||||
Sbjct: 16 tttggtagccaaggatgacttgcc 39
>51674_ptc-miR169q:pmrd
Length = 115
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 1 cttgtttggtagccaaggacgacttgcc 28
|||||| | |||||||||||||||||||
Sbjct: 2 cttgttagttagccaaggacgacttgcc 29
>48355_bna-miR169f:pmrd
Length = 201
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 5 tttggtagccaaggacgacttgcc 28
||||||||||||||| ||||||||
Sbjct: 26 tttggtagccaaggatgacttgcc 49
>48354_bna-miR169e:pmrd
Length = 276
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 5 tttggtagccaaggacgacttgcc 28
||||||||||||||| ||||||||
Sbjct: 246 tttggtagccaaggatgacttgcc 269
>48353_bna-miR169d:pmrd
Length = 220
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 5 tttggtagccaaggacgacttgcc 28
||||||||||||||| ||||||||
Sbjct: 35 tttggtagccaaggatgacttgcc 58
>48352_bna-miR169c:pmrd
Length = 176
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 5 tttggtagccaaggacgacttgcc 28
||||||||||||||| ||||||||
Sbjct: 21 tttggtagccaaggatgacttgcc 44
>47103_ath-miRf10003-akr:pmrd
Length = 141
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 1 cttgtttggtagccaaggacgacttgcc 28
||||| ||||||||||||| ||||||||
Sbjct: 130 cttgtgtggtagccaaggatgacttgcc 103
>46973_ath-miR169m:pmrd
Length = 212
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 5 tttggtagccaaggacgacttgcc 28
||||||||||||||| ||||||||
Sbjct: 37 tttggtagccaaggatgacttgcc 60
>46971_ath-miR169k:pmrd
Length = 213
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 5 tttggtagccaaggacgacttgcc 28
||||||||||||||| ||||||||
Sbjct: 38 tttggtagccaaggatgacttgcc 61
>46969_ath-miR169i:pmrd
Length = 206
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 5 tttggtagccaaggacgacttgcc 28
||||||||||||||| ||||||||
Sbjct: 35 tttggtagccaaggatgacttgcc 58
>46968_ath-miR169h:pmrd
Length = 190
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 1 cttgtttggtagccaaggacgacttgcc 28
||||| ||||||||||||| ||||||||
Sbjct: 37 cttgtgtggtagccaaggatgacttgcc 64
