miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00645;MIR169_2;AARH01004261.1/78455-78341 3694:Populus
trichocarpa
Length = 115
Score = 204 bits (103), Expect = 2e-52
Identities = 106/107 (99%)
Strand = Plus / Plus
Query: 1 cttgtttggtagccaaggacgacttgcccaccaccatctcagttgggtccaatatattac 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 3 cttgtttggtagccaaggacgacttgcccaccaccatcttagttgggtccaatatattac 62
Query: 61 tgggcaccttccatttggttttgggcaagcaccttggctagctgaca 107
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63 tgggcaccttccatttggttttgggcaagcaccttggctagctgaca 109
>RF00865;MIR169_5;AARH01004262.1/367-494 3694:Populus trichocarpa
Length = 128
Score = 192 bits (97), Expect = 6e-49
Identities = 103/105 (98%)
Strand = Plus / Minus
Query: 3 tgtttggtagccaaggacgacttgcccaccaccatctcagttgggtccaatatattactg 62
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct: 117 tgtttggtagccaaggacgacttgcccaccaccatcttagttgggtccagtatattactg 58
Query: 63 ggcaccttccatttggttttgggcaagcaccttggctagctgaca 107
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57 ggcaccttccatttggttttgggcaagcaccttggctagctgaca 13
>RF00865;MIR169_5;AARH01003347.1/60268-60395 3694:Populus
trichocarpa
Length = 128
Score = 65.9 bits (33), Expect = 1e-10
Identities = 87/105 (82%)
Strand = Plus / Minus
Query: 3 tgtttggtagccaaggacgacttgcccaccaccatctcagttgggtccaatatattactg 62
||||||| ||||||||| ||||||||| || | ||| || ||| |||| | |||||||
Sbjct: 117 tgtttggcagccaaggaagacttgcccgtcatcgtcttagctggttccagtgtattactt 58
Query: 63 ggcaccttccatttggttttgggcaagcaccttggctagctgaca 107
||||||| |||||||||||| |||||||||| ||||||||||
Sbjct: 57 agcaccttttgtttggttttggggaagcaccttgactagctgaca 13
>RF00865;MIR169_5;AARH01003823.1/108214-108346 3694:Populus
trichocarpa
Length = 133
Score = 50.1 bits (25), Expect = 6e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 3 tgtttggtagccaaggacgacttgcccac 31
||||||||||||||||| |||||||||||
Sbjct: 121 tgtttggtagccaaggatgacttgcccac 93
>RF00865;MIR169_5;AARH01000472.1/145584-145453 3694:Populus
trichocarpa
Length = 132
Score = 50.1 bits (25), Expect = 6e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 3 tgtttggtagccaaggacgacttgcccac 31
||||||||||||||||| |||||||||||
Sbjct: 120 tgtttggtagccaaggatgacttgcccac 92
>RF00865;MIR169_5;AARH01003347.1/61012-61135 3694:Populus
trichocarpa
Length = 124
Score = 50.1 bits (25), Expect = 6e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 3 tgtttggtagccaaggacgacttgcccac 31
|||| ||||||||||||||||||||||||
Sbjct: 112 tgttcggtagccaaggacgacttgcccac 84
>RF00645;MIR169_2;AARH01003823.1/108339-108220 3694:Populus
trichocarpa
Length = 120
Score = 50.1 bits (25), Expect = 6e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 3 tgtttggtagccaaggacgacttgcccac 31
||||||||||||||||| |||||||||||
Sbjct: 6 tgtttggtagccaaggatgacttgcccac 34
>RF00645;MIR169_2;AARH01003347.1/61128-61018 3694:Populus
trichocarpa
Length = 111
Score = 50.1 bits (25), Expect = 6e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 3 tgtttggtagccaaggacgacttgcccac 31
|||| ||||||||||||||||||||||||
Sbjct: 6 tgttcggtagccaaggacgacttgcccac 34
>RF00645;MIR169_2;AARH01000472.1/145460-145578 3694:Populus
trichocarpa
Length = 119
Score = 50.1 bits (25), Expect = 6e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 3 tgtttggtagccaaggacgacttgcccac 31
||||||||||||||||| |||||||||||
Sbjct: 6 tgtttggtagccaaggatgacttgcccac 34
>RF00865;MIR169_5;AARH01000583.1/30070-29928 3694:Populus
trichocarpa
Length = 143
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 1 cttgtttggtagccaaggacgacttgcc 28
||||||||||||||||||| ||||||||
Sbjct: 133 cttgtttggtagccaaggatgacttgcc 106
>RF00865;MIR169_5;AC216452.1/111365-111227 3694:Populus trichocarpa
Length = 139
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 1 cttgtttggtagccaaggacgacttgcc 28
||||||||||||||||||| ||||||||
Sbjct: 129 cttgtttggtagccaaggatgacttgcc 102
>RF00865;MIR169_5;AASG02003632.1/18323-18451 3988:Ricinus communis
(castor bean)
Length = 129
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 4 gtttggtagccaaggacgacttgcccac 31
|||||||||||||||| |||||||||||
Sbjct: 114 gtttggtagccaaggatgacttgcccac 87
>RF00865;MIR169_5;AASG02003632.1/10304-10430 3988:Ricinus communis
(castor bean)
Length = 127
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 2 ttgtttggtagccaaggacgacttgccc 29
|||||||||||||||||| |||||||||
Sbjct: 116 ttgtttggtagccaaggatgacttgccc 89
>RF00645;MIR169_2;AARH01001852.1/3885-3676 3694:Populus
trichocarpa
Length = 210
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 1 cttgtttggtagccaaggacgacttgcc 28
||||||||||||||||||| ||||||||
Sbjct: 4 cttgtttggtagccaaggatgacttgcc 31
>RF00645;MIR169_2;AC216452.1/111234-111359 3694:Populus
trichocarpa
Length = 126
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 1 cttgtttggtagccaaggacgacttgcc 28
||||||||||||||||||| ||||||||
Sbjct: 4 cttgtttggtagccaaggatgacttgcc 31
>RF00645;MIR169_2;AARH01000583.1/29935-30064 3694:Populus
trichocarpa
Length = 130
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 1 cttgtttggtagccaaggacgacttgcc 28
||||||||||||||||||| ||||||||
Sbjct: 4 cttgtttggtagccaaggatgacttgcc 31
>RF00645;MIR169_2;AASG02003632.1/18444-18329 3988:Ricinus communis
(castor bean)
Length = 116
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 4 gtttggtagccaaggacgacttgcccac 31
|||||||||||||||| |||||||||||
Sbjct: 9 gtttggtagccaaggatgacttgcccac 36
>RF00865;MIR169_5;ABIM01001939.1/16104-16248 3649:Carica papaya
(papaya)
Length = 145
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 2 ttgtttggtagccaaggacgacttgcc 28
|||||||||||||||||| ||||||||
Sbjct: 132 ttgtttggtagccaaggatgacttgcc 106
>RF00865;MIR169_5;AARH01002590.1/191263-191135 3694:Populus
trichocarpa
Length = 129
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 9 gtagccaaggacgacttgcccac 31
|||||||||||||||||||||||
Sbjct: 112 gtagccaaggacgacttgcccac 90
>RF00645;MIR169_2;ABIM01001939.1/16240-16110 3649:Carica papaya
(papaya)
Length = 131
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 2 ttgtttggtagccaaggacgacttgcc 28
|||||||||||||||||| ||||||||
Sbjct: 6 ttgtttggtagccaaggatgacttgcc 32
>RF00645;MIR169_2;AARH01002590.1/191142-191257 3694:Populus
trichocarpa
Length = 116
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 gtagccaaggacgacttgcccac 31
|||||||||||||||||||||||
Sbjct: 11 gtagccaaggacgacttgcccac 33
>RF00865;MIR169_5;ABIM01022203.1/1875-2012 3649:Carica papaya
(papaya)
Length = 138
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 3 tgtttggtagccaaggacgacttgcc 28
||||||||||||||||| ||||||||
Sbjct: 123 tgtttggtagccaaggatgacttgcc 98
>RF00865;MIR169_5;AARH01004262.1/629-776 3694:Populus trichocarpa
Length = 148
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1 cttgtttggtagccaaggacga 22
||||||||||||||||||||||
Sbjct: 138 cttgtttggtagccaaggacga 117
>RF00645;MIR169_2;ABIM01022203.1/2003-1881 3649:Carica papaya
(papaya)
Length = 123
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 3 tgtttggtagccaaggacgacttgcc 28
||||||||||||||||| ||||||||
Sbjct: 7 tgtttggtagccaaggatgacttgcc 32
