miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00865;MIR169_5;AARH01002590.1/191263-191135 3694:Populus
trichocarpa
Length = 129
Score = 212 bits (107), Expect = 7e-55
Identities = 107/107 (100%)
Strand = Plus / Minus
Query: 1 tcttgtttgtagccaaggacgacttgcccacaatatgtatcgtgagcgtttccaatttgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 tcttgtttgtagccaaggacgacttgcccacaatatgtatcgtgagcgtttccaatttgc 61
Query: 61 aacctcatacttggtttgttttgggcagtctccttggctatgcagat 107
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60 aacctcatacttggtttgttttgggcagtctccttggctatgcagat 14
>RF00645;MIR169_2;AARH01002590.1/191142-191257 3694:Populus
trichocarpa
Length = 116
Score = 212 bits (107), Expect = 7e-55
Identities = 107/107 (100%)
Strand = Plus / Plus
Query: 1 tcttgtttgtagccaaggacgacttgcccacaatatgtatcgtgagcgtttccaatttgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 tcttgtttgtagccaaggacgacttgcccacaatatgtatcgtgagcgtttccaatttgc 62
Query: 61 aacctcatacttggtttgttttgggcagtctccttggctatgcagat 107
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63 aacctcatacttggtttgttttgggcagtctccttggctatgcagat 109
>RF00865;MIR169_5;AARH01003347.1/61012-61135 3694:Populus
trichocarpa
Length = 124
Score = 50.1 bits (25), Expect = 6e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 9 gtagccaaggacgacttgcccacaatatg 37
|||||||||||||||||||||||| ||||
Sbjct: 106 gtagccaaggacgacttgcccacactatg 78
>RF00645;MIR169_2;AARH01003347.1/61128-61018 3694:Populus
trichocarpa
Length = 111
Score = 50.1 bits (25), Expect = 6e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 9 gtagccaaggacgacttgcccacaatatg 37
|||||||||||||||||||||||| ||||
Sbjct: 12 gtagccaaggacgacttgcccacactatg 40
>RF00865;MIR169_5;AARH01004262.1/367-494 3694:Populus trichocarpa
Length = 128
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 9 gtagccaaggacgacttgcccac 31
|||||||||||||||||||||||
Sbjct: 111 gtagccaaggacgacttgcccac 89
>RF00645;MIR169_2;AARH01004261.1/78455-78341 3694:Populus
trichocarpa
Length = 115
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 gtagccaaggacgacttgcccac 31
|||||||||||||||||||||||
Sbjct: 11 gtagccaaggacgacttgcccac 33
