miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>51656_ptc-miR169ad:pmrd
Length = 101
Score = 200 bits (101), Expect = 1e-52
Identities = 101/101 (100%)
Strand = Plus / Plus
Query: 1 gatgttcggtagccaaggacgacttgcccacactatgagacaagtggttagaattagcaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gatgttcggtagccaaggacgacttgcccacactatgagacaagtggttagaattagcaa 60
Query: 61 cttcttaattggttatgggaagtctccttggctatgctgac 101
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cttcttaattggttatgggaagtctccttggctatgctgac 101
>53831_ptc-miRf12009-akr:pmrd
Length = 138
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 3 tgttcggtagccaaggacgacttgcccac 31
|||| ||||||||||||||||||||||||
Sbjct: 17 tgtttggtagccaaggacgacttgcccac 45
>53746_ptc-miRf11924-akr:pmrd
Length = 138
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 3 tgttcggtagccaaggacgacttgcccac 31
|||| ||||||||||||||||||||||||
Sbjct: 17 tgtttggtagccaaggacgacttgcccac 45
>51906_ptc-miRf10084-akr:pmrd
Length = 103
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 9 gtagccaaggacgacttgcccacactatg 37
|||||||||||||||||||||||| ||||
Sbjct: 5 gtagccaaggacgacttgcccacaatatg 33
>51658_ptc-miR169af:pmrd
Length = 107
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 3 tgttcggtagccaaggacgacttgcccac 31
|||| ||||||||||||||||||||||||
Sbjct: 3 tgtttggtagccaaggacgacttgcccac 31
>51657_ptc-miR169ae:pmrd
Length = 107
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 3 tgttcggtagccaaggacgacttgcccac 31
|||| ||||||||||||||||||||||||
Sbjct: 3 tgtttggtagccaaggacgacttgcccac 31
>51655_ptc-miR169ac:pmrd
Length = 107
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 9 gtagccaaggacgacttgcccacactatg 37
|||||||||||||||||||||||| ||||
Sbjct: 9 gtagccaaggacgacttgcccacaatatg 37
>51654_ptc-miR169ab:pmrd
Length = 107
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 3 tgttcggtagccaaggacgacttgcccac 31
|||| ||||||||||||||||||||||||
Sbjct: 3 tgtttggtagccaaggacgacttgcccac 31
>51680_ptc-miR169w:pmrd
Length = 109
Score = 46.1 bits (23), Expect = 5e-06
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 3 tgttcggtagccaaggacgacttgcccacactatg 37
|||| |||||||||||| ||||||||||| |||||
Sbjct: 3 tgtttggtagccaaggatgacttgcccactctatg 37
>51679_ptc-miR169v:pmrd
Length = 110
Score = 42.1 bits (21), Expect = 8e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 3 tgttcggtagccaaggacgacttgcccac 31
|||| |||||||||||| |||||||||||
Sbjct: 3 tgtttggtagccaaggatgacttgcccac 31
>51678_ptc-miR169u:pmrd
Length = 122
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 8 ggtagccaaggacgacttgcc 28
|||||||||||||||||||||
Sbjct: 9 ggtagccaaggacgacttgcc 29
>48881_osa-miR169f:pmrd
Length = 170
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 5 ttcggtagccaaggacgacttgcc 28
||||||||||||||| ||||||||
Sbjct: 6 ttcggtagccaaggatgacttgcc 29
