miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>51659_ptc-miR169b:pmrd
Length = 113
Score = 224 bits (113), Expect = 1e-59
Identities = 113/113 (100%)
Strand = Plus / Plus
Query: 1 aagattgatgcagccaaggatgacttgccgacgactcgtttttgctttcatcaatatacg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aagattgatgcagccaaggatgacttgccgacgactcgtttttgctttcatcaatatacg 60
Query: 61 cataattaagaagagatgaatccgttggcaggttgttcttggctacatttttc 113
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cataattaagaagagatgaatccgttggcaggttgttcttggctacatttttc 113
>52003_ptc-miRf10181-akr:pmrd
Length = 113
Score = 222 bits (112), Expect = 4e-59
Identities = 112/112 (100%)
Strand = Plus / Plus
Query: 2 agattgatgcagccaaggatgacttgccgacgactcgtttttgctttcatcaatatacgc 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agattgatgcagccaaggatgacttgccgacgactcgtttttgctttcatcaatatacgc 60
Query: 62 ataattaagaagagatgaatccgttggcaggttgttcttggctacatttttc 113
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ataattaagaagagatgaatccgttggcaggttgttcttggctacatttttc 112
>54367_ptr-miR169a:pmrd
Length = 101
Score = 131 bits (66), Expect = 1e-31
Identities = 92/101 (91%), Gaps = 6/101 (5%)
Strand = Plus / Plus
Query: 11 cagccaaggatgacttgccgacgactcgtttttgcttt------catcaatatacgcata 64
|||||||||||||||||||||||||||| ||||||||| |||||||||| |||||
Sbjct: 1 cagccaaggatgacttgccgacgactcgcttttgcttttgcttccatcaatataggcata 60
Query: 65 attaagaagagatgaatccgttggcaggttgttcttggcta 105
|| ||||||||||||||||||||||||||||||||||||||
Sbjct: 61 atcaagaagagatgaatccgttggcaggttgttcttggcta 101
>51660_ptc-miR169c:pmrd
Length = 102
Score = 65.9 bits (33), Expect = 6e-12
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 5 ttgatgcagccaaggatgacttgccgacgactc 37
|||||||||||||||||||||||||||||||||
Sbjct: 5 ttgatgcagccaaggatgacttgccgacgactc 37
Score = 54.0 bits (27), Expect = 2e-08
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 69 agaagagatgaatccgttggcaggttgttcttggctacatttt 111
||||||||||||| ||||||||||| | ||||||||||||||
Sbjct: 58 agaagagatgaataggttggcaggttttccttggctacatttt 100
>54368_ptr-miR169b:pmrd
Length = 84
Score = 52.0 bits (26), Expect = 9e-08
Identities = 36/38 (94%), Gaps = 1/38 (2%)
Strand = Plus / Plus
Query: 11 cagccaaggatgacttgccgacgactc-gtttttgctt 47
||||||||||||| ||||||||||||| ||||||||||
Sbjct: 1 cagccaaggatgatttgccgacgactcagtttttgctt 38
>48309_bdi-miR169a:pmrd
Length = 121
Score = 52.0 bits (26), Expect = 9e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 7 gatgcagccaaggatgacttgccgac 32
||||||||||||||||||||||||||
Sbjct: 12 gatgcagccaaggatgacttgccgac 37
>51652_ptc-miR169a:pmrd
Length = 165
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 8 atgcagccaaggatgacttgccgac 32
|||||||||||||||||||||||||
Sbjct: 8 atgcagccaaggatgacttgccgac 32
>48718_mtr-miR169b:pmrd
Length = 121
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 8 atgcagccaaggatgacttgccgac 32
|||||||||||||||||||||||||
Sbjct: 18 atgcagccaaggatgacttgccgac 42
>48717_mtr-miR169a:pmrd
Length = 121
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 8 atgcagccaaggatgacttgccgac 32
|||||||||||||||||||||||||
Sbjct: 18 atgcagccaaggatgacttgccgac 42
>48561_gma-miR169a:pmrd
Length = 121
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 6 tgatgcagccaaggatgacttgccg 30
|||||||||||||||||||||||||
Sbjct: 16 tgatgcagccaaggatgacttgccg 40
>55005_zma-miR169c:pmrd
Length = 134
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 7 gatgcagccaaggatgacttgccg 30
||||||||||||||||||||||||
Sbjct: 17 gatgcagccaaggatgacttgccg 40
>54809_vvi-miR169g:pmrd
Length = 121
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 9 tgcagccaaggatgacttgccgac 32
||||||||||||||||||||||||
Sbjct: 11 tgcagccaaggatgacttgccgac 34
>50631_osa-miRf11416-akr:pmrd
Length = 141
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 7 gatgcagccaaggatgacttgccg 30
||||||||||||||||||||||||
Sbjct: 127 gatgcagccaaggatgacttgccg 104
>50630_osa-miRf11415-akr:pmrd
Length = 147
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 7 gatgcagccaaggatgacttgccg 30
||||||||||||||||||||||||
Sbjct: 18 gatgcagccaaggatgacttgccg 41
>49845_osa-miRf10630-akr:pmrd
Length = 114
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 7 gatgcagccaaggatgacttgccg 30
||||||||||||||||||||||||
Sbjct: 107 gatgcagccaaggatgacttgccg 84
>48891_osa-miR169p:pmrd
Length = 126
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 7 gatgcagccaaggatgacttgccg 30
||||||||||||||||||||||||
Sbjct: 120 gatgcagccaaggatgacttgccg 97
>48878_osa-miR169c:pmrd
Length = 112
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 7 gatgcagccaaggatgacttgccg 30
||||||||||||||||||||||||
Sbjct: 7 gatgcagccaaggatgacttgccg 30
>55004_zma-miR169b:pmrd
Length = 156
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 tgcagccaaggatgacttgccga 31
|||||||||||||||||||||||
Sbjct: 19 tgcagccaaggatgacttgccga 41
>55003_zma-miR169a:pmrd
Length = 130
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 tgcagccaaggatgacttgccga 31
|||||||||||||||||||||||
Sbjct: 19 tgcagccaaggatgacttgccga 41
>54808_vvi-miR169f:pmrd
Length = 184
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 tgcagccaaggatgacttgccga 31
|||||||||||||||||||||||
Sbjct: 11 tgcagccaaggatgacttgccga 33
>54805_vvi-miR169c:pmrd
Length = 90
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 8 atgcagccaaggatgacttgccg 30
|||||||||||||||||||||||
Sbjct: 10 atgcagccaaggatgacttgccg 32
>54803_vvi-miR169a:pmrd
Length = 124
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 8 atgcagccaaggatgacttgccg 30
|||||||||||||||||||||||
Sbjct: 10 atgcagccaaggatgacttgccg 32
>54549_sly-miR169c:pmrd
Length = 147
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 tgcagccaaggatgacttgccga 31
|||||||||||||||||||||||
Sbjct: 39 tgcagccaaggatgacttgccga 61
>51664_ptc-miR169g:pmrd
Length = 106
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 8 atgcagccaaggatgacttgccg 30
|||||||||||||||||||||||
Sbjct: 8 atgcagccaaggatgacttgccg 30
>51661_ptc-miR169d:pmrd
Length = 111
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 8 atgcagccaaggatgacttgccg 30
|||||||||||||||||||||||
Sbjct: 8 atgcagccaaggatgacttgccg 30
>51339_phy-miR169:pmrd
Length = 146
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 8 atgcagccaaggatgacttgccg 30
|||||||||||||||||||||||
Sbjct: 12 atgcagccaaggatgacttgccg 34
>48877_osa-miR169b:pmrd
Length = 128
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 8 atgcagccaaggatgacttgccg 30
|||||||||||||||||||||||
Sbjct: 8 atgcagccaaggatgacttgccg 30
>48876_osa-miR169a:pmrd
Length = 173
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 tgcagccaaggatgacttgccga 31
|||||||||||||||||||||||
Sbjct: 36 tgcagccaaggatgacttgccga 58
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 85 ttggcaggttgttcttggctacat 108
|||||| |||||||||||||||||
Sbjct: 112 ttggcaagttgttcttggctacat 135
>48562_gma-miR169b:pmrd
Length = 183
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 tgcagccaaggatgacttgccga 31
|||||||||||||||||||||||
Sbjct: 9 tgcagccaaggatgacttgccga 31
>48351_bna-miR169b:pmrd
Length = 188
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 tgcagccaaggatgacttgccga 31
|||||||||||||||||||||||
Sbjct: 16 tgcagccaaggatgacttgccga 38
>48350_bna-miR169a:pmrd
Length = 132
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 tgcagccaaggatgacttgccga 31
|||||||||||||||||||||||
Sbjct: 17 tgcagccaaggatgacttgccga 39
>47961_ath-miRf10861-akr:pmrd
Length = 109
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 8 atgcagccaaggatgacttgccg 30
|||||||||||||||||||||||
Sbjct: 2 atgcagccaaggatgacttgccg 24
>47674_ath-miRf10574-akr:pmrd
Length = 123
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 8 atgcagccaaggatgacttgccg 30
|||||||||||||||||||||||
Sbjct: 115 atgcagccaaggatgacttgccg 93
>46961_ath-miR169b:pmrd
Length = 181
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 8 atgcagccaaggatgacttgccg 30
|||||||||||||||||||||||
Sbjct: 40 atgcagccaaggatgacttgccg 62
>46960_ath-miR169a:pmrd
Length = 226
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 tgcagccaaggatgacttgccga 31
|||||||||||||||||||||||
Sbjct: 16 tgcagccaaggatgacttgccga 38
>46875_aqc-miR169c:pmrd
Length = 111
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 8 atgcagccaaggatgacttgccg 30
|||||||||||||||||||||||
Sbjct: 2 atgcagccaaggatgacttgccg 24
>46859_ama-miR169:pmrd
Length = 100
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 agccaaggatgacttgccgacga 34
|||||||||||||||||||||||
Sbjct: 15 agccaaggatgacttgccgacga 37
>55021_zma-miR169s:pmrd
Length = 150
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 cagccaaggatgacttgccgac 32
||||||||||||||||||||||
Sbjct: 1 cagccaaggatgacttgccgac 22
>54825_vvi-miR169w:pmrd
Length = 143
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 tgcagccaaggatgacttgccg 30
||||||||||||||||||||||
Sbjct: 11 tgcagccaaggatgacttgccg 32
>54821_vvi-miR169s:pmrd
Length = 99
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 tgcagccaaggatgacttgccg 30
||||||||||||||||||||||
Sbjct: 11 tgcagccaaggatgacttgccg 32
>54813_vvi-miR169k:pmrd
Length = 122
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 tgcagccaaggatgacttgccg 30
||||||||||||||||||||||
Sbjct: 11 tgcagccaaggatgacttgccg 32
>54812_vvi-miR169j:pmrd
Length = 122
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 tgcagccaaggatgacttgccg 30
||||||||||||||||||||||
Sbjct: 11 tgcagccaaggatgacttgccg 32
>54547_sly-miR169a:pmrd
Length = 149
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 tgcagccaaggatgacttgccg 30
||||||||||||||||||||||
Sbjct: 39 tgcagccaaggatgacttgccg 60
>51663_ptc-miR169f:pmrd
Length = 239
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 tgcagccaaggatgacttgccg 30
||||||||||||||||||||||
Sbjct: 9 tgcagccaaggatgacttgccg 30
>48719_mtr-miR169c:pmrd
Length = 82
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 11 cagccaaggatgacttgccgac 32
||||||||||||||||||||||
Sbjct: 82 cagccaaggatgacttgccgac 61
>48563_gma-miR169c:pmrd
Length = 115
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 7 gatgcagccaaggatgacttgccgac 32
|||| |||||||||||||||||||||
Sbjct: 7 gatgaagccaaggatgacttgccgac 32
>55023_zma-miR169u:pmrd
Length = 90
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 cagccaaggatgacttgccga 31
|||||||||||||||||||||
Sbjct: 1 cagccaaggatgacttgccga 21
>55022_zma-miR169t:pmrd
Length = 116
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 cagccaaggatgacttgccga 31
|||||||||||||||||||||
Sbjct: 1 cagccaaggatgacttgccga 21
>54437_sbi-miR169a:pmrd
Length = 91
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 cagccaaggatgacttgccga 31
|||||||||||||||||||||
Sbjct: 1 cagccaaggatgacttgccga 21
>51676_ptc-miR169s:pmrd
Length = 120
Score = 42.1 bits (21), Expect = 9e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 6 tgatgcagccaaggatgacttgccg 30
|||| ||||||||||||||||||||
Sbjct: 7 tgattcagccaaggatgacttgccg 31
>51662_ptc-miR169e:pmrd
Length = 166
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 10 gcagccaaggatgacttgccg 30
|||||||||||||||||||||
Sbjct: 10 gcagccaaggatgacttgccg 30
>55020_zma-miR169r:pmrd
Length = 95
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 cagccaaggatgacttgccg 30
||||||||||||||||||||
Sbjct: 1 cagccaaggatgacttgccg 20
>54447_sbi-miR169k:pmrd
Length = 97
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 cagccaaggatgacttgccg 30
||||||||||||||||||||
Sbjct: 1 cagccaaggatgacttgccg 20
>54438_sbi-miR169b:pmrd
Length = 102
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 cagccaaggatgacttgccg 30
||||||||||||||||||||
Sbjct: 1 cagccaaggatgacttgccg 20
>54091_ptc-miRf12269-akr:pmrd
Length = 122
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 11 cagccaaggatgacttgccg 30
||||||||||||||||||||
Sbjct: 111 cagccaaggatgacttgccg 92
>52526_ptc-miRf10704-akr:pmrd
Length = 120
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 11 cagccaaggatgacttgccg 30
||||||||||||||||||||
Sbjct: 110 cagccaaggatgacttgccg 91
>52491_ptc-miRf10669-akr:pmrd
Length = 110
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 87 ggcaggttgttcttggctacattt 110
|||| |||||||||||||||||||
Sbjct: 87 ggcaagttgttcttggctacattt 110
>51683_ptc-miR169z:pmrd
Length = 118
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 87 ggcaggttgttcttggctacattt 110
|||| |||||||||||||||||||
Sbjct: 92 ggcaagttgttcttggctacattt 115
>51665_ptc-miR169h:pmrd
Length = 118
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 cagccaaggatgacttgccg 30
||||||||||||||||||||
Sbjct: 11 cagccaaggatgacttgccg 30
>48639_gso-miR169a:pmrd
Length = 103
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 cagccaaggatgacttgccg 30
||||||||||||||||||||
Sbjct: 1 cagccaaggatgacttgccg 20
>48564_gma-miR169p:pmrd
Length = 111
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 cagccaaggatgacttgccg 30
||||||||||||||||||||
Sbjct: 1 cagccaaggatgacttgccg 20
>46964_ath-miR169e:pmrd
Length = 217
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 agccaaggatgacttgccga 31
||||||||||||||||||||
Sbjct: 71 agccaaggatgacttgccga 90
>46963_ath-miR169d:pmrd
Length = 154
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 agccaaggatgacttgccga 31
||||||||||||||||||||
Sbjct: 43 agccaaggatgacttgccga 62
>46962_ath-miR169c:pmrd
Length = 411
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 cagccaaggatgacttgccg 30
||||||||||||||||||||
Sbjct: 113 cagccaaggatgacttgccg 132
