miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>51669_ptc-miR169l:pmrd
Length = 143
Score = 283 bits (143), Expect = 2e-77
Identities = 143/143 (100%)
Strand = Plus / Plus
Query: 1 tcttgtttgatagccaaggatgacttgcctgctacatacaagagatcattatgcataaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tcttgtttgatagccaaggatgacttgcctgctacatacaagagatcattatgcataaat 60
Query: 61 agaacgaaatatgtacatggtattaattaatgcagtgaaaactcttgtttggttgccagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 agaacgaaatatgtacatggtattaattaatgcagtgaaaactcttgtttggttgccagg 120
Query: 121 cagtctccttggctaagctgaca 143
|||||||||||||||||||||||
Sbjct: 121 cagtctccttggctaagctgaca 143
>51667_ptc-miR169j:pmrd
Length = 137
Score = 71.9 bits (36), Expect = 1e-13
Identities = 42/44 (95%)
Strand = Plus / Plus
Query: 1 tcttgtttgatagccaaggatgacttgcctgctacatacaagag 44
||||||||||||||||||||||||||||||||||| | ||||||
Sbjct: 1 tcttgtttgatagccaaggatgacttgcctgctacttgcaagag 44
Score = 65.9 bits (33), Expect = 8e-12
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 99 aaactcttgtttggttgccaggcagtctccttggcta 135
||||||||||||| |||||||||||||||||||||||
Sbjct: 93 aaactcttgtttgattgccaggcagtctccttggcta 129
>52726_ptc-miRf10904-akr:pmrd
Length = 132
Score = 58.0 bits (29), Expect = 2e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 1 tcttgtttgatagccaaggatgacttgcctgct 33
||||||||| |||||||||||||||||||||||
Sbjct: 5 tcttgtttggtagccaaggatgacttgcctgct 37
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 117 caggcagtctccttggctaa 136
||||||||||||||||||||
Sbjct: 100 caggcagtctccttggctaa 119
>51670_ptc-miR169m:pmrd
Length = 119
Score = 58.0 bits (29), Expect = 2e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 1 tcttgtttgatagccaaggatgacttgcctgct 33
||||||||| |||||||||||||||||||||||
Sbjct: 1 tcttgtttggtagccaaggatgacttgcctgct 33
>51666_ptc-miR169i:pmrd
Length = 123
Score = 58.0 bits (29), Expect = 2e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 1 tcttgtttgatagccaaggatgacttgcctgct 33
||||||||| |||||||||||||||||||||||
Sbjct: 1 tcttgtttggtagccaaggatgacttgcctgct 33
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 117 caggcagtctccttggctaa 136
||||||||||||||||||||
Sbjct: 96 caggcagtctccttggctaa 115
>54807_vvi-miR169e:pmrd
Length = 149
Score = 56.0 bits (28), Expect = 7e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 1 tcttgtttgatagccaaggatgacttgcctgc 32
|||||| |||||||||||||||||||||||||
Sbjct: 2 tcttgtctgatagccaaggatgacttgcctgc 33
>48487_ghb-miR169a:pmrd
Length = 189
Score = 56.0 bits (28), Expect = 7e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 1 tcttgtttgatagccaaggatgacttgcctgc 32
||||||||| ||||||||||||||||||||||
Sbjct: 40 tcttgtttggtagccaaggatgacttgcctgc 71
>51668_ptc-miR169k:pmrd
Length = 203
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 1 tcttgtttgatagccaaggatgacttgcctg 31
||||||||| |||||||||||||||||||||
Sbjct: 1 tcttgtttggtagccaaggatgacttgcctg 31
>54548_sly-miR169b:pmrd
Length = 205
Score = 48.1 bits (24), Expect = 2e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 1 tcttgtttgatagccaaggatgacttgcctgc 32
|||| |||| ||||||||||||||||||||||
Sbjct: 161 tcttatttggtagccaaggatgacttgcctgc 192
>54448_sbi-miR169l:pmrd
Length = 97
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 8 tgatagccaaggatgacttgcctg 31
||||||||||||||||||||||||
Sbjct: 97 tgatagccaaggatgacttgcctg 74
>48892_osa-miR169q:pmrd
Length = 108
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 8 tgatagccaaggatgacttgcctg 31
||||||||||||||||||||||||
Sbjct: 101 tgatagccaaggatgacttgcctg 78
>48887_osa-miR169l:pmrd
Length = 108
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 8 tgatagccaaggatgacttgcctg 31
||||||||||||||||||||||||
Sbjct: 8 tgatagccaaggatgacttgcctg 31
>46972_ath-miR169l:pmrd
Length = 211
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 4 tgtttgatagccaaggatgacttgcctg 31
||||| ||||||||||||||||||||||
Sbjct: 37 tgtttaatagccaaggatgacttgcctg 64
>46971_ath-miR169k:pmrd
Length = 213
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 6 tttgatagccaaggatgacttgcctgct 33
|||| |||||||||||||||||||||||
Sbjct: 38 tttggtagccaaggatgacttgcctgct 65
>55012_zma-miR169j:pmrd
Length = 151
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 gatagccaaggatgacttgcctg 31
|||||||||||||||||||||||
Sbjct: 19 gatagccaaggatgacttgcctg 41
>55010_zma-miR169h:pmrd
Length = 128
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 8 tgatagccaaggatgacttgcct 30
|||||||||||||||||||||||
Sbjct: 18 tgatagccaaggatgacttgcct 40
>55007_zma-miR169e:pmrd
Length = 128
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 8 tgatagccaaggatgacttgcct 30
|||||||||||||||||||||||
Sbjct: 112 tgatagccaaggatgacttgcct 90
>55006_zma-miR169d:pmrd
Length = 128
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 8 tgatagccaaggatgacttgcct 30
|||||||||||||||||||||||
Sbjct: 112 tgatagccaaggatgacttgcct 90
>54444_sbi-miR169h:pmrd
Length = 155
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 gatagccaaggatgacttgcctg 31
|||||||||||||||||||||||
Sbjct: 19 gatagccaaggatgacttgcctg 41
>54443_sbi-miR169g:pmrd
Length = 152
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 gatagccaaggatgacttgcctg 31
|||||||||||||||||||||||
Sbjct: 19 gatagccaaggatgacttgcctg 41
>48886_osa-miR169k:pmrd
Length = 156
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 gatagccaaggatgacttgcctg 31
|||||||||||||||||||||||
Sbjct: 9 gatagccaaggatgacttgcctg 31
>48361_bna-miR169l:pmrd
Length = 199
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tagccaaggatgacttgcctgct 33
|||||||||||||||||||||||
Sbjct: 25 tagccaaggatgacttgcctgct 47
>48359_bna-miR169j:pmrd
Length = 167
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tagccaaggatgacttgcctgct 33
|||||||||||||||||||||||
Sbjct: 9 tagccaaggatgacttgcctgct 31
>48358_bna-miR169i:pmrd
Length = 174
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tagccaaggatgacttgcctgct 33
|||||||||||||||||||||||
Sbjct: 15 tagccaaggatgacttgcctgct 37
>47103_ath-miRf10003-akr:pmrd
Length = 141
Score = 46.1 bits (23), Expect = 7e-06
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 2 cttgtttgatagccaaggatgacttgcctgc 32
||||| || ||||||||||||||||||||||
Sbjct: 130 cttgtgtggtagccaaggatgacttgcctgc 100
>46968_ath-miR169h:pmrd
Length = 190
Score = 46.1 bits (23), Expect = 7e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 2 cttgtttgatagccaaggatgacttgcctgc 32
||||| || ||||||||||||||||||||||
Sbjct: 37 cttgtgtggtagccaaggatgacttgcctgc 67
>51680_ptc-miR169w:pmrd
Length = 109
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 4 tgtttgatagccaaggatgacttgcc 29
|||||| |||||||||||||||||||
Sbjct: 3 tgtttggtagccaaggatgacttgcc 28
>51679_ptc-miR169v:pmrd
Length = 110
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 4 tgtttgatagccaaggatgacttgcc 29
|||||| |||||||||||||||||||
Sbjct: 3 tgtttggtagccaaggatgacttgcc 28
>51675_ptc-miR169r:pmrd
Length = 119
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 5 gtttgatagccaaggatgacttgcct 30
||||| ||||||||||||||||||||
Sbjct: 5 gtttggtagccaaggatgacttgcct 30
>48360_bna-miR169k:pmrd
Length = 155
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tagccaaggatgacttgcctgc 32
||||||||||||||||||||||
Sbjct: 34 tagccaaggatgacttgcctgc 55
>48357_bna-miR169h:pmrd
Length = 176
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tagccaaggatgacttgcctgc 32
||||||||||||||||||||||
Sbjct: 37 tagccaaggatgacttgcctgc 58
>48356_bna-miR169g:pmrd
Length = 168
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tagccaaggatgacttgcctgc 32
||||||||||||||||||||||
Sbjct: 37 tagccaaggatgacttgcctgc 58
>46973_ath-miR169m:pmrd
Length = 212
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 6 tttgatagccaaggatgacttgcctg 31
|||| |||||||||||||||||||||
Sbjct: 37 tttggtagccaaggatgacttgcctg 62
>46969_ath-miR169i:pmrd
Length = 206
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 6 tttgatagccaaggatgacttgcctg 31
|||| |||||||||||||||||||||
Sbjct: 35 tttggtagccaaggatgacttgcctg 60
>55013_zma-miR169k:pmrd
Length = 133
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tagccaaggatgacttgcctg 31
|||||||||||||||||||||
Sbjct: 21 tagccaaggatgacttgcctg 41
>55011_zma-miR169i:pmrd
Length = 191
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tagccaaggatgacttgcctg 31
|||||||||||||||||||||
Sbjct: 21 tagccaaggatgacttgcctg 41
>54442_sbi-miR169f:pmrd
Length = 148
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tagccaaggatgacttgcctg 31
|||||||||||||||||||||
Sbjct: 21 tagccaaggatgacttgcctg 41
>54441_sbi-miR169e:pmrd
Length = 240
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tagccaaggatgacttgcctg 31
|||||||||||||||||||||
Sbjct: 21 tagccaaggatgacttgcctg 41
>54440_sbi-miR169d:pmrd
Length = 125
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 6 tttgatagccaaggatgacttgcct 30
|||| ||||||||||||||||||||
Sbjct: 16 tttggtagccaaggatgacttgcct 40
>54439_sbi-miR169c:pmrd
Length = 126
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 6 tttgatagccaaggatgacttgcct 30
|||| ||||||||||||||||||||
Sbjct: 16 tttggtagccaaggatgacttgcct 40
>48888_osa-miR169m:pmrd
Length = 138
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tagccaaggatgacttgcctg 31
|||||||||||||||||||||
Sbjct: 11 tagccaaggatgacttgcctg 31
>48885_osa-miR169j:pmrd
Length = 125
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tagccaaggatgacttgcctg 31
|||||||||||||||||||||
Sbjct: 11 tagccaaggatgacttgcctg 31
>48884_osa-miR169i:pmrd
Length = 108
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tagccaaggatgacttgcctg 31
|||||||||||||||||||||
Sbjct: 11 tagccaaggatgacttgcctg 31
>48883_osa-miR169h:pmrd
Length = 122
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tagccaaggatgacttgcctg 31
|||||||||||||||||||||
Sbjct: 11 tagccaaggatgacttgcctg 31
>48355_bna-miR169f:pmrd
Length = 201
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 6 tttgatagccaaggatgacttgcct 30
|||| ||||||||||||||||||||
Sbjct: 26 tttggtagccaaggatgacttgcct 50
>48354_bna-miR169e:pmrd
Length = 276
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 6 tttgatagccaaggatgacttgcct 30
|||| ||||||||||||||||||||
Sbjct: 246 tttggtagccaaggatgacttgcct 270
>48353_bna-miR169d:pmrd
Length = 220
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 6 tttgatagccaaggatgacttgcct 30
|||| ||||||||||||||||||||
Sbjct: 35 tttggtagccaaggatgacttgcct 59
>48352_bna-miR169c:pmrd
Length = 176
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 6 tttgatagccaaggatgacttgcct 30
|||| ||||||||||||||||||||
Sbjct: 21 tttggtagccaaggatgacttgcct 45
>46974_ath-miR169n:pmrd
Length = 215
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tagccaaggatgacttgcctg 31
|||||||||||||||||||||
Sbjct: 45 tagccaaggatgacttgcctg 65
>46970_ath-miR169j:pmrd
Length = 221
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tagccaaggatgacttgcctg 31
|||||||||||||||||||||
Sbjct: 51 tagccaaggatgacttgcctg 71
>46874_aqc-miR169b:pmrd
Length = 180
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tagccaaggatgacttgcctg 31
|||||||||||||||||||||
Sbjct: 1 tagccaaggatgacttgcctg 21
>55015_zma-miR169m:pmrd
Length = 89
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 tagccaaggatgacttgcct 30
||||||||||||||||||||
Sbjct: 1 tagccaaggatgacttgcct 20
>55014_zma-miR169l:pmrd
Length = 89
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 tagccaaggatgacttgcct 30
||||||||||||||||||||
Sbjct: 1 tagccaaggatgacttgcct 20
>55009_zma-miR169g:pmrd
Length = 140
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 tagccaaggatgacttgcct 30
||||||||||||||||||||
Sbjct: 21 tagccaaggatgacttgcct 40
>55008_zma-miR169f:pmrd
Length = 150
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 tagccaaggatgacttgcct 30
||||||||||||||||||||
Sbjct: 21 tagccaaggatgacttgcct 40
>54827_vvi-miR169y:pmrd
Length = 248
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 3 ttgtttgatagccaaggatgacttgcct 30
||||||| |||| |||||||||||||||
Sbjct: 3 ttgtttggtagcgaaggatgacttgcct 30
>54826_vvi-miR169x:pmrd
Length = 125
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 tagccaaggatgacttgcct 30
||||||||||||||||||||
Sbjct: 12 tagccaaggatgacttgcct 31
>54550_sly-miR169d:pmrd
Length = 176
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 tagccaaggatgacttgcct 30
||||||||||||||||||||
Sbjct: 39 tagccaaggatgacttgcct 58
>54450_sbi-miR169n:pmrd
Length = 93
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 tagccaaggatgacttgcct 30
||||||||||||||||||||
Sbjct: 3 tagccaaggatgacttgcct 22
>54449_sbi-miR169m:pmrd
Length = 92
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 tagccaaggatgacttgcct 30
||||||||||||||||||||
Sbjct: 1 tagccaaggatgacttgcct 20
>51673_ptc-miR169p:pmrd
Length = 104
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 agccaaggatgacttgcctg 31
||||||||||||||||||||
Sbjct: 12 agccaaggatgacttgcctg 31
>51672_ptc-miR169o:pmrd
Length = 104
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 agccaaggatgacttgcctg 31
||||||||||||||||||||
Sbjct: 12 agccaaggatgacttgcctg 31
>48882_osa-miR169g:pmrd
Length = 126
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 tagccaaggatgacttgcct 30
||||||||||||||||||||
Sbjct: 11 tagccaaggatgacttgcct 30
>48881_osa-miR169f:pmrd
Length = 170
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 tagccaaggatgacttgcct 30
||||||||||||||||||||
Sbjct: 11 tagccaaggatgacttgcct 30
>46873_aqc-miR169a:pmrd
Length = 158
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 tagccaaggatgacttgcct 30
||||||||||||||||||||
Sbjct: 26 tagccaaggatgacttgcct 45
>46859_ama-miR169:pmrd
Length = 100
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 10 atagccaaggatgacttgcc 29
||||||||||||||||||||
Sbjct: 13 atagccaaggatgacttgcc 32
