miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00865;MIR169_5;AARH01000472.1/145345-145210 3694:Populus
trichocarpa
Length = 136
Score = 228 bits (115), Expect = 1e-59
Identities = 115/115 (100%)
Strand = Plus / Minus
Query: 1 tcttgttagttagccaaggacgacttgcctgttcctagcaatttgggatttgccctggac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127 tcttgttagttagccaaggacgacttgcctgttcctagcaatttgggatttgccctggac 68
Query: 61 taagaggcaggaccctcattccgggtttcaggcagtctccttggctaggttgaca 115
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67 taagaggcaggaccctcattccgggtttcaggcagtctccttggctaggttgaca 13
>RF00645;MIR169_2;AARH01000472.1/145217-145339 3694:Populus
trichocarpa
Length = 123
Score = 228 bits (115), Expect = 1e-59
Identities = 115/115 (100%)
Strand = Plus / Plus
Query: 1 tcttgttagttagccaaggacgacttgcctgttcctagcaatttgggatttgccctggac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 tcttgttagttagccaaggacgacttgcctgttcctagcaatttgggatttgccctggac 62
Query: 61 taagaggcaggaccctcattccgggtttcaggcagtctccttggctaggttgaca 115
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63 taagaggcaggaccctcattccgggtttcaggcagtctccttggctaggttgaca 117
>RF00865;MIR169_5;AARH01003823.1/108401-108536 3694:Populus
trichocarpa
Length = 136
Score = 79.8 bits (40), Expect = 7e-15
Identities = 90/104 (86%), Gaps = 2/104 (1%)
Strand = Plus / Minus
Query: 14 ccaaggacgacttgcctgttcctagcaatttgggatttgccctggactaag-aggcagga 72
||||||||| |||||||| ||||||||| | |||| || |||||| ||| |||||| |
Sbjct: 116 ccaaggacggcttgcctggtcctagcaactaaggatatgttctggacaaagtaggcagaa 57
Query: 73 -ccctcattccgggtttcaggcagtctccttggctaggttgaca 115
||| |||| ||||||||||||||||||||||||||||||||||
Sbjct: 56 acccacattacgggtttcaggcagtctccttggctaggttgaca 13
>RF00645;MIR169_2;AARH01003823.1/108529-108407 3694:Populus
trichocarpa
Length = 123
Score = 79.8 bits (40), Expect = 7e-15
Identities = 90/104 (86%), Gaps = 2/104 (1%)
Strand = Plus / Plus
Query: 14 ccaaggacgacttgcctgttcctagcaatttgggatttgccctggactaag-aggcagga 72
||||||||| |||||||| ||||||||| | |||| || |||||| ||| |||||| |
Sbjct: 14 ccaaggacggcttgcctggtcctagcaactaaggatatgttctggacaaagtaggcagaa 73
Query: 73 -ccctcattccgggtttcaggcagtctccttggctaggttgaca 115
||| |||| ||||||||||||||||||||||||||||||||||
Sbjct: 74 acccacattacgggtttcaggcagtctccttggctaggttgaca 117
>RF00865;MIR169_5;AB016889.1/38805-38989 3702:Arabidopsis thaliana
(thale cress)
Length = 185
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 84 ggtttcaggcagtctccttggcta 107
||||||||||||||||||||||||
Sbjct: 44 ggtttcaggcagtctccttggcta 21
>RF00645;MIR169_2;AY551201.1/49-220 3702:Arabidopsis thaliana (thale
cress)
Length = 172
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 84 ggtttcaggcagtctccttggcta 107
||||||||||||||||||||||||
Sbjct: 135 ggtttcaggcagtctccttggcta 158
>RF00865;MIR169_5;AARH01000583.1/30070-29928 3694:Populus
trichocarpa
Length = 143
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 85 gtttcaggcagtctccttggcta 107
|||||||||||||||||||||||
Sbjct: 43 gtttcaggcagtctccttggcta 21
>RF00645;MIR169_2;AARH01000583.1/29935-30064 3694:Populus
trichocarpa
Length = 130
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 85 gtttcaggcagtctccttggcta 107
|||||||||||||||||||||||
Sbjct: 94 gtttcaggcagtctccttggcta 116
