miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>51677_ptc-miR169t:pmrd
Length = 108
Score = 214 bits (108), Expect = 1e-56
Identities = 108/108 (100%)
Strand = Plus / Plus
Query: 1 ctagagtccgagccaagaatgacttgccggcaggctagcatttgctagctacagggcaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctagagtccgagccaagaatgacttgccggcaggctagcatttgctagctacagggcaag 60
Query: 61 atgtatgctaaagtgacattccgccaggttgttcttggctctactttg 108
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 atgtatgctaaagtgacattccgccaggttgttcttggctctactttg 108
>53180_ptc-miRf11358-akr:pmrd
Length = 120
Score = 89.7 bits (45), Expect = 4e-19
Identities = 88/101 (87%), Gaps = 1/101 (0%)
Strand = Plus / Minus
Query: 9 cgagccaagaatgacttgccggcaggctagcatttgctagctacagggcaagatgtatgc 68
|||||||||||||||||| ||||||||||||| |||||| || || |||| ||||||||
Sbjct: 107 cgagccaagaatgacttgtcggcaggctagcaattgctacgtatagagcaatatgtatgc 48
Query: 69 taaagtga-cattccgccaggttgttcttggctctactttg 108
|| | ||| |||||||||||| ||||||||||| ||||||
Sbjct: 47 tagaatgagtattccgccaggtcgttcttggctcaactttg 7
>51653_ptc-miR169aa:pmrd
Length = 109
Score = 89.7 bits (45), Expect = 4e-19
Identities = 88/101 (87%), Gaps = 1/101 (0%)
Strand = Plus / Plus
Query: 9 cgagccaagaatgacttgccggcaggctagcatttgctagctacagggcaagatgtatgc 68
|||||||||||||||||| ||||||||||||| |||||| || || |||| ||||||||
Sbjct: 9 cgagccaagaatgacttgtcggcaggctagcaattgctacgtatagagcaatatgtatgc 68
Query: 69 taaagtga-cattccgccaggttgttcttggctctactttg 108
|| | ||| |||||||||||| ||||||||||| ||||||
Sbjct: 69 tagaatgagtattccgccaggtcgttcttggctcaactttg 109
>54818_vvi-miR169p:pmrd
Length = 102
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 10 gagccaagaatgacttgccggcag 33
|||||||| |||||||||||||||
Sbjct: 12 gagccaaggatgacttgccggcag 35
>54815_vvi-miR169m:pmrd
Length = 102
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 10 gagccaagaatgacttgccggcag 33
|||||||| |||||||||||||||
Sbjct: 12 gagccaaggatgacttgccggcag 35
