miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00645;MIR169_2;AARH01002993.1/8667-8551 3694:Populus trichocarpa
Length = 117
Score = 214 bits (108), Expect = 2e-55
Identities = 108/108 (100%)
Strand = Plus / Plus
Query: 1 ctagagtccgagccaagaatgacttgccggcaggctagcatttgctagctacagggcaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 ctagagtccgagccaagaatgacttgccggcaggctagcatttgctagctacagggcaag 63
Query: 61 atgtatgctaaagtgacattccgccaggttgttcttggctctactttg 108
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 atgtatgctaaagtgacattccgccaggttgttcttggctctactttg 111
>RF00645;MIR169_2;AARH01007603.1/195565-195448 3694:Populus
trichocarpa
Length = 118
Score = 89.7 bits (45), Expect = 7e-18
Identities = 88/101 (87%), Gaps = 1/101 (0%)
Strand = Plus / Plus
Query: 9 cgagccaagaatgacttgccggcaggctagcatttgctagctacagggcaagatgtatgc 68
|||||||||||||||||| ||||||||||||| |||||| || || |||| ||||||||
Sbjct: 12 cgagccaagaatgacttgtcggcaggctagcaattgctacgtatagagcaatatgtatgc 71
Query: 69 taaagtga-cattccgccaggttgttcttggctctactttg 108
|| | ||| |||||||||||| ||||||||||| ||||||
Sbjct: 72 tagaatgagtattccgccaggtcgttcttggctcaactttg 112
>RF00645;MIR169_2;AASG02018779.1/689-776 3988:Ricinus communis
(castor bean)
Length = 88
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 gagccaagaatgacttgccggc 31
||||||||||||||||||||||
Sbjct: 13 gagccaagaatgacttgccggc 34
