miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>51678_ptc-miR169u:pmrd
Length = 122
Score = 242 bits (122), Expect = 5e-65
Identities = 122/122 (100%)
Strand = Plus / Plus
Query: 1 gagggttgggtagccaaggacgacttgcctatttcctccatggggtcctgaaaagaatga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gagggttgggtagccaaggacgacttgcctatttcctccatggggtcctgaaaagaatga 60
Query: 61 aatactgtcgttcagagctcattggtagggttcataggcagtctcctttggctatcctaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aatactgtcgttcagagctcattggtagggttcataggcagtctcctttggctatcctaa 120
Query: 121 ct 122
||
Sbjct: 121 ct 122
>51675_ptc-miR169r:pmrd
Length = 119
Score = 81.8 bits (41), Expect = 1e-16
Identities = 100/119 (84%), Gaps = 3/119 (2%)
Strand = Plus / Plus
Query: 1 gagggttgggtagccaaggacgacttgcctatttcctccatggggtcctgaaaagaatga 60
||||||| |||||||||||| |||||||||||||||||||| || | ||||| ||||
Sbjct: 1 gagggtttggtagccaaggatgacttgcctatttcctccataaggctttaaaaagcatga 60
Query: 61 aatactgtcgttcagagctcattggtagggttcataggcagtctcctttggctatccta 119
|| ||| ||| |||||||| | | |||||||||||||||||| |||||| |||||||
Sbjct: 61 aa---tgtggtttagagctcaattgaagggttcataggcagtctactttggttatccta 116
>48354_bna-miR169e:pmrd
Length = 276
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 9 ggtagccaaggacgacttgcctatttc 35
|||||||||||| ||||||||||||||
Sbjct: 249 ggtagccaaggatgacttgcctatttc 275
>48352_bna-miR169c:pmrd
Length = 176
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 9 ggtagccaaggacgacttgcctatttc 35
|||||||||||| ||||||||||||||
Sbjct: 24 ggtagccaaggatgacttgcctatttc 50
>54450_sbi-miR169n:pmrd
Length = 93
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 9 ggtagccaaggacgacttgcctatttcctc 38
|||||||||||| ||||||||||| |||||
Sbjct: 1 ggtagccaaggatgacttgcctatatcctc 30
>53831_ptc-miRf12009-akr:pmrd
Length = 138
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 9 ggtagccaaggacgacttgcc 29
|||||||||||||||||||||
Sbjct: 22 ggtagccaaggacgacttgcc 42
>53746_ptc-miRf11924-akr:pmrd
Length = 138
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 9 ggtagccaaggacgacttgcc 29
|||||||||||||||||||||
Sbjct: 22 ggtagccaaggacgacttgcc 42
>51658_ptc-miR169af:pmrd
Length = 107
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 9 ggtagccaaggacgacttgcc 29
|||||||||||||||||||||
Sbjct: 8 ggtagccaaggacgacttgcc 28
>51657_ptc-miR169ae:pmrd
Length = 107
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 9 ggtagccaaggacgacttgcc 29
|||||||||||||||||||||
Sbjct: 8 ggtagccaaggacgacttgcc 28
>51656_ptc-miR169ad:pmrd
Length = 101
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 9 ggtagccaaggacgacttgcc 29
|||||||||||||||||||||
Sbjct: 8 ggtagccaaggacgacttgcc 28
>51654_ptc-miR169ab:pmrd
Length = 107
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 9 ggtagccaaggacgacttgcc 29
|||||||||||||||||||||
Sbjct: 8 ggtagccaaggacgacttgcc 28
>48882_osa-miR169g:pmrd
Length = 126
Score = 42.1 bits (21), Expect = 9e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 9 ggtagccaaggacgacttgcctatt 33
|||||||||||| ||||||||||||
Sbjct: 9 ggtagccaaggatgacttgcctatt 33
>55015_zma-miR169m:pmrd
Length = 89
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 89 ggttcataggcagtctcctt 108
||||||||||||||||||||
Sbjct: 65 ggttcataggcagtctcctt 84
>55006_zma-miR169d:pmrd
Length = 128
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 89 ggttcataggcagtctcctt 108
||||||||||||||||||||
Sbjct: 45 ggttcataggcagtctcctt 26
>54449_sbi-miR169m:pmrd
Length = 92
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 11 tagccaaggacgacttgcctatttcctc 38
|||||||||| ||||||||||| |||||
Sbjct: 1 tagccaaggatgacttgcctatatcctc 28
>54448_sbi-miR169l:pmrd
Length = 97
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 89 ggttcataggcagtctcctt 108
||||||||||||||||||||
Sbjct: 27 ggttcataggcagtctcctt 8
>51906_ptc-miRf10084-akr:pmrd
Length = 103
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 10 gtagccaaggacgacttgcc 29
||||||||||||||||||||
Sbjct: 5 gtagccaaggacgacttgcc 24
>51674_ptc-miR169q:pmrd
Length = 115
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 tagccaaggacgacttgcct 30
||||||||||||||||||||
Sbjct: 11 tagccaaggacgacttgcct 30
>51655_ptc-miR169ac:pmrd
Length = 107
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 10 gtagccaaggacgacttgcc 29
||||||||||||||||||||
Sbjct: 9 gtagccaaggacgacttgcc 28
>48884_osa-miR169i:pmrd
Length = 108
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 89 ggttcataggcagtctcctt 108
||||||||||||||||||||
Sbjct: 74 ggttcataggcagtctcctt 93
