miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00865;MIR169_5;AARH01006471.1/64000-63854 3694:Populus
trichocarpa
Length = 147
Score = 242 bits (122), Expect = 9e-64
Identities = 122/122 (100%)
Strand = Plus / Minus
Query: 1 gagggttgggtagccaaggacgacttgcctatttcctccatggggtcctgaaaagaatga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134 gagggttgggtagccaaggacgacttgcctatttcctccatggggtcctgaaaagaatga 75
Query: 61 aatactgtcgttcagagctcattggtagggttcataggcagtctcctttggctatcctaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74 aatactgtcgttcagagctcattggtagggttcataggcagtctcctttggctatcctaa 15
Query: 121 ct 122
||
Sbjct: 14 ct 13
>RF00645;MIR169_2;AARH01006471.1/63866-63996 3694:Populus
trichocarpa
Length = 131
Score = 242 bits (122), Expect = 9e-64
Identities = 122/122 (100%)
Strand = Plus / Plus
Query: 1 gagggttgggtagccaaggacgacttgcctatttcctccatggggtcctgaaaagaatga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 gagggttgggtagccaaggacgacttgcctatttcctccatggggtcctgaaaagaatga 61
Query: 61 aatactgtcgttcagagctcattggtagggttcataggcagtctcctttggctatcctaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 aatactgtcgttcagagctcattggtagggttcataggcagtctcctttggctatcctaa 121
Query: 121 ct 122
||
Sbjct: 122 ct 123
>RF00865;MIR169_5;AARH01006471.1/67165-67023 3694:Populus
trichocarpa
Length = 143
Score = 81.8 bits (41), Expect = 2e-15
Identities = 100/119 (84%), Gaps = 3/119 (2%)
Strand = Plus / Minus
Query: 1 gagggttgggtagccaaggacgacttgcctatttcctccatggggtcctgaaaagaatga 60
||||||| |||||||||||| |||||||||||||||||||| || | ||||| ||||
Sbjct: 131 gagggtttggtagccaaggatgacttgcctatttcctccataaggctttaaaaagcatga 72
Query: 61 aatactgtcgttcagagctcattggtagggttcataggcagtctcctttggctatccta 119
|| ||| ||| |||||||| | | |||||||||||||||||| |||||| |||||||
Sbjct: 71 aa---tgtggtttagagctcaattgaagggttcataggcagtctactttggttatccta 16
>RF00645;MIR169_2;AARH01006471.1/67030-67159 3694:Populus
trichocarpa
Length = 130
Score = 81.8 bits (41), Expect = 2e-15
Identities = 100/119 (84%), Gaps = 3/119 (2%)
Strand = Plus / Plus
Query: 1 gagggttgggtagccaaggacgacttgcctatttcctccatggggtcctgaaaagaatga 60
||||||| |||||||||||| |||||||||||||||||||| || | ||||| ||||
Sbjct: 6 gagggtttggtagccaaggatgacttgcctatttcctccataaggctttaaaaagcatga 65
Query: 61 aatactgtcgttcagagctcattggtagggttcataggcagtctcctttggctatccta 119
|| ||| ||| |||||||| | | |||||||||||||||||| |||||| |||||||
Sbjct: 66 aa---tgtggtttagagctcaattgaagggttcataggcagtctactttggttatccta 121
>RF00865;MIR169_5;ABIM01001939.1/16104-16248 3649:Carica papaya
(papaya)
Length = 145
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 97 ggcagtctcctttggctatcctaact 122
||||||||||||||||||||||||||
Sbjct: 38 ggcagtctcctttggctatcctaact 13
>RF00645;MIR169_2;ABIM01001939.1/16240-16110 3649:Carica papaya
(papaya)
Length = 131
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 97 ggcagtctcctttggctatcctaact 122
||||||||||||||||||||||||||
Sbjct: 100 ggcagtctcctttggctatcctaact 125
>RF00865;MIR169_5;AASG02006505.1/277-428 3988:Ricinus communis
(castor bean)
Length = 152
Score = 50.1 bits (25), Expect = 7e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 11 tagccaaggacgacttgcctatttcctcc 39
|||||||||| ||||||||||||||||||
Sbjct: 132 tagccaaggatgacttgcctatttcctcc 104
>RF00645;MIR169_2;AASG02006505.1/420-283 3988:Ricinus communis
(castor bean)
Length = 138
Score = 50.1 bits (25), Expect = 7e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 11 tagccaaggacgacttgcctatttcctcc 39
|||||||||| ||||||||||||||||||
Sbjct: 13 tagccaaggatgacttgcctatttcctcc 41
>RF00865;MIR169_5;ABXC01005012.1/10458-10330 4558:Sorghum bicolor
(sorghum)
Length = 129
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 9 ggtagccaaggacgacttgcctatttcctc 38
|||||||||||| ||||||||||| |||||
Sbjct: 109 ggtagccaaggatgacttgcctatatcctc 80
>RF00865;MIR169_5;ABXC01005012.1/7179-7306 4558:Sorghum bicolor
(sorghum)
Length = 128
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 9 ggtagccaaggacgacttgcctatttcctc 38
|||||||||||| ||||||||||| |||||
Sbjct: 111 ggtagccaaggatgacttgcctatatcctc 82
>RF00645;MIR169_2;ABXC01005012.1/7295-7185 4558:Sorghum bicolor
(sorghum)
Length = 111
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 9 ggtagccaaggacgacttgcctatttcctc 38
|||||||||||| ||||||||||| |||||
Sbjct: 7 ggtagccaaggatgacttgcctatatcctc 36
>RF00645;MIR169_2;ABXC01005012.1/10344-10452 4558:Sorghum bicolor
(sorghum)
Length = 109
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 9 ggtagccaaggacgacttgcctatttcctc 38
|||||||||||| ||||||||||| |||||
Sbjct: 7 ggtagccaaggatgacttgcctatatcctc 36
