miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00643;MIR171_1;AC152351.7/84740-84636 3880:Medicago truncatula
           (barrel medic)
          Length = 105

 Score =  133 bits (67), Expect = 5e-31
 Identities = 90/95 (94%), Gaps = 2/95 (2%)
 Strand = Plus / Plus

                                                                       
Query: 6   aaagcgatgttggtgaggttcaatccgaagacggatttacacgtgaaagtaattgtaaaa 65
           ||||||||||||||||||||||||||||||||||||||||| || | || | ||||||||
Sbjct: 6   aaagcgatgttggtgaggttcaatccgaagacggatttacatgt-atag-agttgtaaaa 63

                                              
Query: 66  tacgatctcagattgagccgcgccaatatcacttt 100
           |||||||||||||||||||||||||||||||||||
Sbjct: 64  tacgatctcagattgagccgcgccaatatcacttt 98




>RF00643;MIR171_1;AY728474.1/2-89 3694:Populus trichocarpa
          Length = 88

 Score =  109 bits (55), Expect = 7e-24
 Identities = 83/92 (90%), Gaps = 4/92 (4%)
 Strand = Plus / Plus

                                                                      
Query: 8  agcgatgttggtgaggttcaatccgaagacggatttacacgtgaaagtaattgtaaaata 67
          |||||||||||||||||||||||||||||| ||||||||||    ||| |  ||||||| 
Sbjct: 1  agcgatgttggtgaggttcaatccgaagacagatttacacg----agtgaaagtaaaatc 56

                                          
Query: 68 cgatctcagattgagccgcgccaatatcactt 99
          ||||||||||||||||||||||||||||||||
Sbjct: 57 cgatctcagattgagccgcgccaatatcactt 88




>RF00643;MIR171_1;AASG02008156.1/3849-3747 3988:Ricinus communis
           (castor bean)
          Length = 103

 Score =  101 bits (51), Expect = 2e-21
 Identities = 85/96 (88%), Gaps = 4/96 (4%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaaagcgatgttggtgaggttcaatccgaagacggatttacacgtgaaagtaattgtaaa 64
           |||||||||||||||||||||||||||||||||||||||||||    |     |||||||
Sbjct: 5   gaaagcgatgttggtgaggttcaatccgaagacggatttacac----attctgttgtaaa 60

                                               
Query: 65  atacgatctcagattgagccgcgccaatatcacttt 100
             ||||||||||||||||||||||||||||||||||
Sbjct: 61  ggacgatctcagattgagccgcgccaatatcacttt 96




>RF00643;MIR171_1;ABIM01011221.1/13564-13667 3649:Carica papaya
           (papaya)
          Length = 104

 Score = 89.7 bits (45), Expect = 7e-18
 Identities = 88/100 (88%), Gaps = 3/100 (3%)
 Strand = Plus / Plus

                                                                       
Query: 2   aaagaaagcgatgttggtgaggttcaatccgaagacggatttacacgtgaaagtaattgt 61
           ||||||||||||||||||||||||||||| |||||| |||||||| | | | |  |||||
Sbjct: 2   aaagaaagcgatgttggtgaggttcaatctgaagacagatttacatgag-atgcgattgt 60

                                                   
Query: 62  aaaatacgatctcagattgagccgcgccaatatcactttc 101
             ||| |||||||||| |||||||||||||||||||||||
Sbjct: 61  --aattcgatctcagaatgagccgcgccaatatcactttc 98




>RF00643;MIR171_1;CAAP02000222.1/31256-31356 29760:Vitis vinifera
          Length = 101

 Score = 81.8 bits (41), Expect = 2e-15
 Identities = 87/101 (86%), Gaps = 6/101 (5%)
 Strand = Plus / Plus

                                                                       
Query: 2   aaagaaagcgatgttggtgaggttcaatccgaagacggatttacacgtgaaagtaattgt 61
           |||| |||||||||||||||||||||||||||||||||||||||    |||   |   ||
Sbjct: 2   aaagtaagcgatgttggtgaggttcaatccgaagacggatttac----gaa--gagccgt 55

                                                    
Query: 62  aaaatacgatctcagattgagccgcgccaatatcactttct 102
           |||  |||||||| |||||||||||||||||||||||||||
Sbjct: 56  aaagaacgatctctgattgagccgcgccaatatcactttct 96




>RF00643;MIR171_1;AM437215.2/7577-7677 29760:Vitis vinifera
          Length = 101

 Score = 77.8 bits (39), Expect = 3e-14
 Identities = 83/98 (84%), Gaps = 6/98 (6%)
 Strand = Plus / Plus

                                                                       
Query: 3   aagaaagcgatgttggtgaggttcaatccgaagacggatttacacgtgaaagtaattgta 62
           |||||||||||||||||||||||||||| |||||  ||||||  | ||||      ||||
Sbjct: 3   aagaaagcgatgttggtgaggttcaatctgaagattgatttatgcttgaa------tgta 56

                                                 
Query: 63  aaatacgatctcagattgagccgcgccaatatcacttt 100
           |||   ||||||||||||||||||||||||||||||||
Sbjct: 57  aaaactgatctcagattgagccgcgccaatatcacttt 94




>RF00643;MIR171_1;AC209588.1/19088-18986 4081:Solanum lycopersicum
          Length = 103

 Score = 71.9 bits (36), Expect = 2e-12
 Identities = 79/93 (84%), Gaps = 4/93 (4%)
 Strand = Plus / Plus

                                                                      
Query: 7  aagcgatgttggtgaggttcaatccgaagacggatttacacgtgaaagtaattgtaaaat 66
          |||||||||||||||||||||||||||||||| |||||    ||    |  | |||||  
Sbjct: 7  aagcgatgttggtgaggttcaatccgaagacgaattta----tgcttattttcgtaaaga 62

                                           
Query: 67 acgatctcagattgagccgcgccaatatcactt 99
          |||||||||||||||||||||||||||||||||
Sbjct: 63 acgatctcagattgagccgcgccaatatcactt 95




>RF00643;MIR171_1;ABEU01001861.1/185639-185542
          145481:Physcomitrella patens subsp. patens
          Length = 98

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 72 ctcagattgagccgcgccaatatcac 97
          ||||||||||||||||||||||||||
Sbjct: 63 ctcagattgagccgcgccaatatcac 88




>RF00643;MIR171_1;ABEU01005399.1/9805-9901 145481:Physcomitrella
          patens subsp. patens
          Length = 97

 Score = 50.1 bits (25), Expect = 6e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 73 tcagattgagccgcgccaatatcac 97
          |||||||||||||||||||||||||
Sbjct: 63 tcagattgagccgcgccaatatcac 87




>RF00643;MIR171_1;ABXC01002454.1/83659-83541 4558:Sorghum bicolor
           (sorghum)
          Length = 119

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 76  gattgagccgcgccaatatcactt 99
           ||||||||||||||||||||||||
Sbjct: 88  gattgagccgcgccaatatcactt 111




>RF00643;MIR171_1;AP010316.1/5761-5862 34305:Lotus japonicus
          Length = 102

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 76 gattgagccgcgccaatatcac 97
          ||||||||||||||||||||||
Sbjct: 71 gattgagccgcgccaatatcac 92




>RF00643;MIR171_1;AC212766.1/32177-32277 4081:Solanum lycopersicum
          Length = 101

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 76 gattgagccgcgccaatatcac 97
          ||||||||||||||||||||||
Sbjct: 70 gattgagccgcgccaatatcac 91




>RF00643;MIR171_1;AP003573.3/25796-25895 39947:Oryza sativa
          Japonica Group
          Length = 100

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 8  agcgatgttggtgaggttcaatccga 33
          |||||| |||||||||||||||||||
Sbjct: 8  agcgatattggtgaggttcaatccga 33