miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>51688_ptc-miR171e:pmrd
Length = 94
Score = 186 bits (94), Expect = 2e-48
Identities = 94/94 (100%)
Strand = Plus / Plus
Query: 1 gtggaaatttgatgttggcagagctcaatcaaatcaaagcactcaatggttgggttcttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtggaaatttgatgttggcagagctcaatcaaatcaaagcactcaatggttgggttcttt 60
Query: 61 catctgattgagccgtgccaatatcgcattaaat 94
||||||||||||||||||||||||||||||||||
Sbjct: 61 catctgattgagccgtgccaatatcgcattaaat 94
>52725_ptc-miRf10903-akr:pmrd
Length = 85
Score = 168 bits (85), Expect = 4e-43
Identities = 85/85 (100%)
Strand = Plus / Plus
Query: 6 aatttgatgttggcagagctcaatcaaatcaaagcactcaatggttgggttctttcatct 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aatttgatgttggcagagctcaatcaaatcaaagcactcaatggttgggttctttcatct 60
Query: 66 gattgagccgtgccaatatcgcatt 90
|||||||||||||||||||||||||
Sbjct: 61 gattgagccgtgccaatatcgcatt 85
>54828_vvi-miR171a:pmrd
Length = 99
Score = 79.8 bits (40), Expect = 3e-16
Identities = 67/76 (88%)
Strand = Plus / Plus
Query: 10 tgatgttggcagagctcaatcaaatcaaagcactcaatggttgggttctttcatctgatt 69
||||||||| | ||||||||||| ||||| ||||||||||| || |||| ||||||||
Sbjct: 13 tgatgttgggacggctcaatcaaaccaaagatctcaatggttgagtcctttaatctgatt 72
Query: 70 gagccgtgccaatatc 85
||||||||||||||||
Sbjct: 73 gagccgtgccaatatc 88
>46877_aqc-miR171b:pmrd
Length = 77
Score = 77.8 bits (39), Expect = 1e-15
Identities = 57/63 (90%)
Strand = Plus / Plus
Query: 23 gctcaatcaaatcaaagcactcaatggttgggttctttcatctgattgagccgtgccaat 82
|||||||||||| ||||| ||||| | |||||| |||| |||||||||||||||||||||
Sbjct: 13 gctcaatcaaatgaaagctctcaaagattgggtcctttaatctgattgagccgtgccaat 72
Query: 83 atc 85
|||
Sbjct: 73 atc 75
>54836_vvi-miR171i:pmrd
Length = 103
Score = 60.0 bits (30), Expect = 3e-10
Identities = 57/65 (87%), Gaps = 2/65 (3%)
Strand = Plus / Plus
Query: 23 gctcaatcaaatcaaagcactcaatggtt--gggttctttcatctgattgagccgtgcca 80
|||||||||||||||| | | ||| |||| |||| |||| |||||||||||||||||||
Sbjct: 25 gctcaatcaaatcaaatctcccaagggttttgggtcctttaatctgattgagccgtgcca 84
Query: 81 atatc 85
|||||
Sbjct: 85 atatc 89
>51691_ptc-miR171h:pmrd
Length = 100
Score = 50.1 bits (25), Expect = 3e-07
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 49 gttgggttctttcatctgattgagccgtgccaatatc 85
||||||| ||| ||||||||||||||||||||||||
Sbjct: 55 gttgggtcgtttaatctgattgagccgtgccaatatc 91
>51690_ptc-miR171g:pmrd
Length = 100
Score = 50.1 bits (25), Expect = 3e-07
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 49 gttgggttctttcatctgattgagccgtgccaatatc 85
||||||| ||| ||||||||||||||||||||||||
Sbjct: 55 gttgggtcttttaatctgattgagccgtgccaatatc 91
>51346_ppe-miR171:pmrd
Length = 97
Score = 48.1 bits (24), Expect = 1e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 50 ttgggttctttcatctgattgagccgtgccaatatc 85
|||||| |||| || |||||||||||||||||||||
Sbjct: 52 ttgggtcctttaatttgattgagccgtgccaatatc 87
>51345_ppe-miR170:pmrd
Length = 97
Score = 48.1 bits (24), Expect = 1e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 50 ttgggttctttcatctgattgagccgtgccaatatc 85
|||||| |||| || |||||||||||||||||||||
Sbjct: 52 ttgggtcctttaatttgattgagccgtgccaatatc 87
>55037_zma-miR171j:pmrd
Length = 129
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 63 tctgattgagccgtgccaatatc 85
|||||||||||||||||||||||
Sbjct: 88 tctgattgagccgtgccaatatc 110
>55032_zma-miR171e:pmrd
Length = 126
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 63 tctgattgagccgtgccaatatc 85
|||||||||||||||||||||||
Sbjct: 85 tctgattgagccgtgccaatatc 107
>55031_zma-miR171d:pmrd
Length = 121
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 63 tctgattgagccgtgccaatatc 85
|||||||||||||||||||||||
Sbjct: 80 tctgattgagccgtgccaatatc 102
>54680_tae-miR170b:pmrd
Length = 94
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 63 tctgattgagccgtgccaatatc 85
|||||||||||||||||||||||
Sbjct: 72 tctgattgagccgtgccaatatc 94
>54460_sbi-miR171i:pmrd
Length = 90
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 63 tctgattgagccgtgccaatatc 85
|||||||||||||||||||||||
Sbjct: 66 tctgattgagccgtgccaatatc 88
>54455_sbi-miR171d:pmrd
Length = 154
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 63 tctgattgagccgtgccaatatc 85
|||||||||||||||||||||||
Sbjct: 113 tctgattgagccgtgccaatatc 135
>54453_sbi-miR171b:pmrd
Length = 132
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 63 tctgattgagccgtgccaatatc 85
|||||||||||||||||||||||
Sbjct: 91 tctgattgagccgtgccaatatc 113
>51689_ptc-miR171f:pmrd
Length = 130
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 63 tctgattgagccgtgccaatatc 85
|||||||||||||||||||||||
Sbjct: 99 tctgattgagccgtgccaatatc 121
>49676_osa-miRf10461-akr:pmrd
Length = 123
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 63 tctgattgagccgtgccaatatc 85
|||||||||||||||||||||||
Sbjct: 93 tctgattgagccgtgccaatatc 115
>48905_osa-miR171n:pmrd
Length = 99
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 63 tctgattgagccgtgccaatatc 85
|||||||||||||||||||||||
Sbjct: 77 tctgattgagccgtgccaatatc 99
>48904_osa-miR171m:pmrd
Length = 107
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 63 tctgattgagccgtgccaatatc 85
|||||||||||||||||||||||
Sbjct: 85 tctgattgagccgtgccaatatc 107
>48900_osa-miR171f:pmrd
Length = 127
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 63 tctgattgagccgtgccaatatc 85
|||||||||||||||||||||||
Sbjct: 95 tctgattgagccgtgccaatatc 117
>48899_osa-miR171e:pmrd
Length = 119
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 63 tctgattgagccgtgccaatatc 85
|||||||||||||||||||||||
Sbjct: 87 tctgattgagccgtgccaatatc 109
>48898_osa-miR171d:pmrd
Length = 135
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 63 tctgattgagccgtgccaatatc 85
|||||||||||||||||||||||
Sbjct: 103 tctgattgagccgtgccaatatc 125
>48894_osa-miR170b:pmrd
Length = 107
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 63 tctgattgagccgtgccaatatc 85
|||||||||||||||||||||||
Sbjct: 85 tctgattgagccgtgccaatatc 107
>48893_osa-miR170a:pmrd
Length = 99
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 63 tctgattgagccgtgccaatatc 85
|||||||||||||||||||||||
Sbjct: 77 tctgattgagccgtgccaatatc 99
>48663_hvv-miR171:pmrd
Length = 78
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 63 tctgattgagccgtgccaatatc 85
|||||||||||||||||||||||
Sbjct: 56 tctgattgagccgtgccaatatc 78
>48662_hvv-miR170:pmrd
Length = 78
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 63 tctgattgagccgtgccaatatc 85
|||||||||||||||||||||||
Sbjct: 56 tctgattgagccgtgccaatatc 78
>55039_zma-miR171m:pmrd
Length = 113
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 65 tgattgagccgtgccaatatc 85
|||||||||||||||||||||
Sbjct: 93 tgattgagccgtgccaatatc 113
>55036_zma-miR171i:pmrd
Length = 104
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 65 tgattgagccgtgccaatatc 85
|||||||||||||||||||||
Sbjct: 65 tgattgagccgtgccaatatc 85
>55033_zma-miR171f:pmrd
Length = 155
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 65 tgattgagccgtgccaatatc 85
|||||||||||||||||||||
Sbjct: 115 tgattgagccgtgccaatatc 135
>55029_zma-miR171b:pmrd
Length = 85
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 65 tgattgagccgtgccaatatc 85
|||||||||||||||||||||
Sbjct: 62 tgattgagccgtgccaatatc 82
>55024_zma-miR170m:pmrd
Length = 115
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 65 tgattgagccgtgccaatatc 85
|||||||||||||||||||||
Sbjct: 95 tgattgagccgtgccaatatc 115
>54831_vvi-miR171d:pmrd
Length = 100
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 65 tgattgagccgtgccaatatc 85
|||||||||||||||||||||
Sbjct: 67 tgattgagccgtgccaatatc 87
>54830_vvi-miR171c:pmrd
Length = 103
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 65 tgattgagccgtgccaatatc 85
|||||||||||||||||||||
Sbjct: 70 tgattgagccgtgccaatatc 90
>54551_sly-miR171a:pmrd
Length = 122
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 65 tgattgagccgtgccaatatc 85
|||||||||||||||||||||
Sbjct: 87 tgattgagccgtgccaatatc 107
>54462_sbi-miR171k:pmrd
Length = 87
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 65 tgattgagccgtgccaatatc 85
|||||||||||||||||||||
Sbjct: 62 tgattgagccgtgccaatatc 82
>54452_sbi-miR171a:pmrd
Length = 161
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 65 tgattgagccgtgccaatatc 85
|||||||||||||||||||||
Sbjct: 122 tgattgagccgtgccaatatc 142
>51882_ptc-miRf10060-akr:pmrd
Length = 87
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 65 tgattgagccgtgccaatatc 85
|||||||||||||||||||||
Sbjct: 63 tgattgagccgtgccaatatc 83
>51692_ptc-miR171i:pmrd
Length = 129
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 65 tgattgagccgtgccaatatc 85
|||||||||||||||||||||
Sbjct: 100 tgattgagccgtgccaatatc 120
>51685_ptc-miR171b:pmrd
Length = 103
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 65 tgattgagccgtgccaatatc 85
|||||||||||||||||||||
Sbjct: 71 tgattgagccgtgccaatatc 91
>51684_ptc-miR171a:pmrd
Length = 104
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 65 tgattgagccgtgccaatatc 85
|||||||||||||||||||||
Sbjct: 72 tgattgagccgtgccaatatc 92
>48897_osa-miR171c:pmrd
Length = 99
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 65 tgattgagccgtgccaatatc 85
|||||||||||||||||||||
Sbjct: 69 tgattgagccgtgccaatatc 89
>48896_osa-miR171b:pmrd
Length = 100
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 65 tgattgagccgtgccaatatc 85
|||||||||||||||||||||
Sbjct: 70 tgattgagccgtgccaatatc 90
>48723_mtr-miR171g:pmrd
Length = 105
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 65 tgattgagccgtgccaatatc 85
|||||||||||||||||||||
Sbjct: 80 tgattgagccgtgccaatatc 100
>48722_mtr-miR171d:pmrd
Length = 105
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 65 tgattgagccgtgccaatatc 85
|||||||||||||||||||||
Sbjct: 80 tgattgagccgtgccaatatc 100
>48403_bra-miR171a:pmrd
Length = 85
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 65 tgattgagccgtgccaatatc 85
|||||||||||||||||||||
Sbjct: 62 tgattgagccgtgccaatatc 82
>48386_bol-miR171a:pmrd
Length = 96
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 65 tgattgagccgtgccaatatc 85
|||||||||||||||||||||
Sbjct: 68 tgattgagccgtgccaatatc 88
>48367_bna-miR171e:pmrd
Length = 92
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 65 tgattgagccgtgccaatatc 85
|||||||||||||||||||||
Sbjct: 67 tgattgagccgtgccaatatc 87
>48366_bna-miR171d:pmrd
Length = 96
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 65 tgattgagccgtgccaatatc 85
|||||||||||||||||||||
Sbjct: 68 tgattgagccgtgccaatatc 88
>48312_bdi-miR171c:pmrd
Length = 86
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 65 tgattgagccgtgccaatatc 85
|||||||||||||||||||||
Sbjct: 64 tgattgagccgtgccaatatc 84
>46979_ath-miR171c:pmrd
Length = 116
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 65 tgattgagccgtgccaatatc 85
|||||||||||||||||||||
Sbjct: 87 tgattgagccgtgccaatatc 107
>46880_aqc-miR171e:pmrd
Length = 102
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 65 tgattgagccgtgccaatatc 85
|||||||||||||||||||||
Sbjct: 21 tgattgagccgtgccaatatc 1
>46879_aqc-miR171d:pmrd
Length = 106
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 65 tgattgagccgtgccaatatc 85
|||||||||||||||||||||
Sbjct: 84 tgattgagccgtgccaatatc 104
>46876_aqc-miR171a:pmrd
Length = 102
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 65 tgattgagccgtgccaatatc 85
|||||||||||||||||||||
Sbjct: 80 tgattgagccgtgccaatatc 100
