miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>51690_ptc-miR171g:pmrd
Length = 100
Score = 198 bits (100), Expect = 5e-52
Identities = 100/100 (100%)
Strand = Plus / Plus
Query: 1 gaaagtgggggatgttgggatggctcaatcatgtcaaatctcccaaattatgatgttggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gaaagtgggggatgttgggatggctcaatcatgtcaaatctcccaaattatgatgttggg 60
Query: 61 tcttttaatctgattgagccgtgccaatatcacacttctt 100
||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tcttttaatctgattgagccgtgccaatatcacacttctt 100
>51691_ptc-miR171h:pmrd
Length = 100
Score = 167 bits (84), Expect = 2e-42
Identities = 93/96 (96%)
Strand = Plus / Plus
Query: 1 gaaagtgggggatgttgggatggctcaatcatgtcaaatctcccaaattatgatgttggg 60
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 1 gaaagtgggggatgttgggatggctcaatcatatcaaatctcccaaactatgatgttggg 60
Query: 61 tcttttaatctgattgagccgtgccaatatcacact 96
|| |||||||||||||||||||||||||||||||||
Sbjct: 61 tcgtttaatctgattgagccgtgccaatatcacact 96
>54836_vvi-miR171i:pmrd
Length = 103
Score = 79.8 bits (40), Expect = 3e-16
Identities = 74/85 (87%), Gaps = 4/85 (4%)
Strand = Plus / Plus
Query: 8 ggggatgttgggatggctcaatcatgtcaaatctcccaaattatgatgttgggtctttta 67
||||||||||| |||||||||||| ||||||||||||| | | ||||||| ||||
Sbjct: 10 ggggatgttggaatggctcaatcaaatcaaatctcccaag----ggttttgggtccttta 65
Query: 68 atctgattgagccgtgccaatatca 92
|||||||||||||||||||||||||
Sbjct: 66 atctgattgagccgtgccaatatca 90
>46877_aqc-miR171b:pmrd
Length = 77
Score = 67.9 bits (34), Expect = 1e-12
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 56 ttgggtcttttaatctgattgagccgtgccaatatcac 93
||||||| ||||||||||||||||||||||||||||||
Sbjct: 40 ttgggtcctttaatctgattgagccgtgccaatatcac 77
>54828_vvi-miR171a:pmrd
Length = 99
Score = 60.0 bits (30), Expect = 3e-10
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 55 gttgggtcttttaatctgattgagccgtgccaatatca 92
|||| ||| |||||||||||||||||||||||||||||
Sbjct: 52 gttgagtcctttaatctgattgagccgtgccaatatca 89
>51346_ppe-miR171:pmrd
Length = 97
Score = 58.0 bits (29), Expect = 1e-09
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 56 ttgggtcttttaatctgattgagccgtgccaatatca 92
||||||| |||||| ||||||||||||||||||||||
Sbjct: 52 ttgggtcctttaatttgattgagccgtgccaatatca 88
>51345_ppe-miR170:pmrd
Length = 97
Score = 58.0 bits (29), Expect = 1e-09
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 56 ttgggtcttttaatctgattgagccgtgccaatatca 92
||||||| |||||| ||||||||||||||||||||||
Sbjct: 52 ttgggtcctttaatttgattgagccgtgccaatatca 88
>49676_osa-miRf10461-akr:pmrd
Length = 123
Score = 52.0 bits (26), Expect = 8e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 69 tctgattgagccgtgccaatatcaca 94
||||||||||||||||||||||||||
Sbjct: 93 tctgattgagccgtgccaatatcaca 118
>48900_osa-miR171f:pmrd
Length = 127
Score = 52.0 bits (26), Expect = 8e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 69 tctgattgagccgtgccaatatcaca 94
||||||||||||||||||||||||||
Sbjct: 95 tctgattgagccgtgccaatatcaca 120
>55037_zma-miR171j:pmrd
Length = 129
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 69 tctgattgagccgtgccaatatcac 93
|||||||||||||||||||||||||
Sbjct: 88 tctgattgagccgtgccaatatcac 112
>54453_sbi-miR171b:pmrd
Length = 132
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 69 tctgattgagccgtgccaatatcac 93
|||||||||||||||||||||||||
Sbjct: 91 tctgattgagccgtgccaatatcac 115
>52725_ptc-miRf10903-akr:pmrd
Length = 85
Score = 50.1 bits (25), Expect = 3e-07
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 55 gttgggtcttttaatctgattgagccgtgccaatatc 91
||||||| ||| ||||||||||||||||||||||||
Sbjct: 44 gttgggttctttcatctgattgagccgtgccaatatc 80
>51688_ptc-miR171e:pmrd
Length = 94
Score = 50.1 bits (25), Expect = 3e-07
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 55 gttgggtcttttaatctgattgagccgtgccaatatc 91
||||||| ||| ||||||||||||||||||||||||
Sbjct: 49 gttgggttctttcatctgattgagccgtgccaatatc 85
>55036_zma-miR171i:pmrd
Length = 104
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 71 tgattgagccgtgccaatatcaca 94
||||||||||||||||||||||||
Sbjct: 65 tgattgagccgtgccaatatcaca 88
>55033_zma-miR171f:pmrd
Length = 155
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 71 tgattgagccgtgccaatatcaca 94
||||||||||||||||||||||||
Sbjct: 115 tgattgagccgtgccaatatcaca 138
>54452_sbi-miR171a:pmrd
Length = 161
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 71 tgattgagccgtgccaatatcaca 94
||||||||||||||||||||||||
Sbjct: 122 tgattgagccgtgccaatatcaca 145
>55032_zma-miR171e:pmrd
Length = 126
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 69 tctgattgagccgtgccaatatc 91
|||||||||||||||||||||||
Sbjct: 85 tctgattgagccgtgccaatatc 107
>55031_zma-miR171d:pmrd
Length = 121
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 69 tctgattgagccgtgccaatatc 91
|||||||||||||||||||||||
Sbjct: 80 tctgattgagccgtgccaatatc 102
>55029_zma-miR171b:pmrd
Length = 85
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 71 tgattgagccgtgccaatatcac 93
|||||||||||||||||||||||
Sbjct: 62 tgattgagccgtgccaatatcac 84
>54831_vvi-miR171d:pmrd
Length = 100
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 71 tgattgagccgtgccaatatcac 93
|||||||||||||||||||||||
Sbjct: 67 tgattgagccgtgccaatatcac 89
>54830_vvi-miR171c:pmrd
Length = 103
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 71 tgattgagccgtgccaatatcac 93
|||||||||||||||||||||||
Sbjct: 70 tgattgagccgtgccaatatcac 92
>54680_tae-miR170b:pmrd
Length = 94
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 69 tctgattgagccgtgccaatatc 91
|||||||||||||||||||||||
Sbjct: 72 tctgattgagccgtgccaatatc 94
>54462_sbi-miR171k:pmrd
Length = 87
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 71 tgattgagccgtgccaatatcac 93
|||||||||||||||||||||||
Sbjct: 62 tgattgagccgtgccaatatcac 84
>54460_sbi-miR171i:pmrd
Length = 90
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 69 tctgattgagccgtgccaatatc 91
|||||||||||||||||||||||
Sbjct: 66 tctgattgagccgtgccaatatc 88
>54455_sbi-miR171d:pmrd
Length = 154
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 69 tctgattgagccgtgccaatatc 91
|||||||||||||||||||||||
Sbjct: 113 tctgattgagccgtgccaatatc 135
>51882_ptc-miRf10060-akr:pmrd
Length = 87
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 71 tgattgagccgtgccaatatcac 93
|||||||||||||||||||||||
Sbjct: 63 tgattgagccgtgccaatatcac 85
>51689_ptc-miR171f:pmrd
Length = 130
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 69 tctgattgagccgtgccaatatc 91
|||||||||||||||||||||||
Sbjct: 99 tctgattgagccgtgccaatatc 121
>51685_ptc-miR171b:pmrd
Length = 103
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 71 tgattgagccgtgccaatatcac 93
|||||||||||||||||||||||
Sbjct: 71 tgattgagccgtgccaatatcac 93
>51684_ptc-miR171a:pmrd
Length = 104
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 71 tgattgagccgtgccaatatcac 93
|||||||||||||||||||||||
Sbjct: 72 tgattgagccgtgccaatatcac 94
>48905_osa-miR171n:pmrd
Length = 99
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 69 tctgattgagccgtgccaatatc 91
|||||||||||||||||||||||
Sbjct: 77 tctgattgagccgtgccaatatc 99
>48904_osa-miR171m:pmrd
Length = 107
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 69 tctgattgagccgtgccaatatc 91
|||||||||||||||||||||||
Sbjct: 85 tctgattgagccgtgccaatatc 107
>48899_osa-miR171e:pmrd
Length = 119
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 69 tctgattgagccgtgccaatatc 91
|||||||||||||||||||||||
Sbjct: 87 tctgattgagccgtgccaatatc 109
>48898_osa-miR171d:pmrd
Length = 135
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 69 tctgattgagccgtgccaatatc 91
|||||||||||||||||||||||
Sbjct: 103 tctgattgagccgtgccaatatc 125
>48897_osa-miR171c:pmrd
Length = 99
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 71 tgattgagccgtgccaatatcac 93
|||||||||||||||||||||||
Sbjct: 69 tgattgagccgtgccaatatcac 91
>48896_osa-miR171b:pmrd
Length = 100
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 71 tgattgagccgtgccaatatcac 93
|||||||||||||||||||||||
Sbjct: 70 tgattgagccgtgccaatatcac 92
>48894_osa-miR170b:pmrd
Length = 107
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 69 tctgattgagccgtgccaatatc 91
|||||||||||||||||||||||
Sbjct: 85 tctgattgagccgtgccaatatc 107
>48893_osa-miR170a:pmrd
Length = 99
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 69 tctgattgagccgtgccaatatc 91
|||||||||||||||||||||||
Sbjct: 77 tctgattgagccgtgccaatatc 99
>48663_hvv-miR171:pmrd
Length = 78
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 69 tctgattgagccgtgccaatatc 91
|||||||||||||||||||||||
Sbjct: 56 tctgattgagccgtgccaatatc 78
>48662_hvv-miR170:pmrd
Length = 78
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 69 tctgattgagccgtgccaatatc 91
|||||||||||||||||||||||
Sbjct: 56 tctgattgagccgtgccaatatc 78
>48403_bra-miR171a:pmrd
Length = 85
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 71 tgattgagccgtgccaatatcac 93
|||||||||||||||||||||||
Sbjct: 62 tgattgagccgtgccaatatcac 84
>48386_bol-miR171a:pmrd
Length = 96
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 71 tgattgagccgtgccaatatcac 93
|||||||||||||||||||||||
Sbjct: 68 tgattgagccgtgccaatatcac 90
>48367_bna-miR171e:pmrd
Length = 92
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 71 tgattgagccgtgccaatatcac 93
|||||||||||||||||||||||
Sbjct: 67 tgattgagccgtgccaatatcac 89
>48366_bna-miR171d:pmrd
Length = 96
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 71 tgattgagccgtgccaatatcac 93
|||||||||||||||||||||||
Sbjct: 68 tgattgagccgtgccaatatcac 90
>48312_bdi-miR171c:pmrd
Length = 86
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 71 tgattgagccgtgccaatatcac 93
|||||||||||||||||||||||
Sbjct: 64 tgattgagccgtgccaatatcac 86
>46979_ath-miR171c:pmrd
Length = 116
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 71 tgattgagccgtgccaatatcac 93
|||||||||||||||||||||||
Sbjct: 87 tgattgagccgtgccaatatcac 109
>54579_smo-miR171a:pmrd
Length = 135
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 72 gattgagccgtgccaatatcac 93
||||||||||||||||||||||
Sbjct: 103 gattgagccgtgccaatatcac 124
>48723_mtr-miR171g:pmrd
Length = 105
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 71 tgattgagccgtgccaatatcacact 96
||||||||||||||||||||| ||||
Sbjct: 80 tgattgagccgtgccaatatctcact 105
>48722_mtr-miR171d:pmrd
Length = 105
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 71 tgattgagccgtgccaatatcacact 96
||||||||||||||||||||| ||||
Sbjct: 80 tgattgagccgtgccaatatctcact 105
>48406_bra-miR171d:pmrd
Length = 101
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 72 gattgagccgtgccaatatcac 93
||||||||||||||||||||||
Sbjct: 71 gattgagccgtgccaatatcac 92
>48405_bra-miR171c:pmrd
Length = 88
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 72 gattgagccgtgccaatatcac 93
||||||||||||||||||||||
Sbjct: 65 gattgagccgtgccaatatcac 86
>48404_bra-miR171b:pmrd
Length = 104
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 72 gattgagccgtgccaatatcac 93
||||||||||||||||||||||
Sbjct: 72 gattgagccgtgccaatatcac 93
>48365_bna-miR171c:pmrd
Length = 88
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 72 gattgagccgtgccaatatcac 93
||||||||||||||||||||||
Sbjct: 65 gattgagccgtgccaatatcac 86
>48364_bna-miR171b:pmrd
Length = 101
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 72 gattgagccgtgccaatatcac 93
||||||||||||||||||||||
Sbjct: 71 gattgagccgtgccaatatcac 92
>48363_bna-miR171a:pmrd
Length = 104
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 72 gattgagccgtgccaatatcac 93
||||||||||||||||||||||
Sbjct: 72 gattgagccgtgccaatatcac 93
>46978_ath-miR171b:pmrd
Length = 117
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 72 gattgagccgtgccaatatcac 93
||||||||||||||||||||||
Sbjct: 76 gattgagccgtgccaatatcac 97
>55039_zma-miR171m:pmrd
Length = 113
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 71 tgattgagccgtgccaatatc 91
|||||||||||||||||||||
Sbjct: 93 tgattgagccgtgccaatatc 113
>55024_zma-miR170m:pmrd
Length = 115
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 71 tgattgagccgtgccaatatc 91
|||||||||||||||||||||
Sbjct: 95 tgattgagccgtgccaatatc 115
