miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00643;MIR171_1;AY728471.1/4-115 3694:Populus trichocarpa
Length = 112
Score = 87.7 bits (44), Expect = 3e-17
Identities = 44/44 (100%)
Strand = Plus / Plus
Query: 11 gatattggcctggttcactcagatcacgacttcagagcaaagtg 54
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gatattggcctggttcactcagatcacgacttcagagcaaagtg 44
Score = 83.8 bits (42), Expect = 5e-16
Identities = 42/42 (100%)
Strand = Plus / Plus
Query: 81 gttttatgttcgtttgatttgattgagccgtgccaatatctc 122
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71 gttttatgttcgtttgatttgattgagccgtgccaatatctc 112
>RF00643;MIR171_1;EU940714.1/212-315 4577:Zea mays
Length = 104
Score = 60.0 bits (30), Expect = 8e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 100 tgattgagccgtgccaatatctcagtactc 129
||||||||||||||||||||||||||||||
Sbjct: 72 tgattgagccgtgccaatatctcagtactc 101
>RF00643;MIR171_1;EU946837.1/362-465 4577:Zea mays
Length = 104
Score = 60.0 bits (30), Expect = 8e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 100 tgattgagccgtgccaatatctcagtactc 129
||||||||||||||||||||||||||||||
Sbjct: 72 tgattgagccgtgccaatatctcagtactc 101
>RF00643;MIR171_1;ABXC01000737.1/81777-81641 4558:Sorghum bicolor
(sorghum)
Length = 137
Score = 60.0 bits (30), Expect = 8e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 100 tgattgagccgtgccaatatctcagtactc 129
||||||||||||||||||||||||||||||
Sbjct: 105 tgattgagccgtgccaatatctcagtactc 134
>RF00643;MIR171_1;ABIM01002570.1/7961-8103 3649:Carica papaya
(papaya)
Length = 143
Score = 58.0 bits (29), Expect = 3e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 1 gagtgactatgatattggcctggttcactcaga 33
|||| ||||||||||||||||||||||||||||
Sbjct: 1 gagtcactatgatattggcctggttcactcaga 33
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 98 tttgattgagccgtgccaatatctcagt 125
||||||||||||||||||||||||||||
Sbjct: 109 tttgattgagccgtgccaatatctcagt 136
>RF00643;MIR171_1;CAAP02019255.1/437-320 29760:Vitis vinifera
Length = 118
Score = 58.0 bits (29), Expect = 3e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 93 tttgatttgattgagccgtgccaatatct 121
|||||||||||||||||||||||||||||
Sbjct: 79 tttgatttgattgagccgtgccaatatct 107
>RF00643;MIR171_1;AASG02019837.1/638-762 3988:Ricinus communis
(castor bean)
Length = 125
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 98 tttgattgagccgtgccaatatctcagt 125
||||||||||||||||||||||||||||
Sbjct: 91 tttgattgagccgtgccaatatctcagt 118
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 10 tgatattggcctggttcactcaga 33
||||||||||||||||||||||||
Sbjct: 10 tgatattggcctggttcactcaga 33
>RF00643;MIR171_1;AC215372.2/27425-27538 4081:Solanum lycopersicum
Length = 114
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 98 tttgattgagccgtgccaatatctcagt 125
||||||||||||||||||||||||||||
Sbjct: 80 tttgattgagccgtgccaatatctcagt 107
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 10 tgatattggcctggttcactcaga 33
||||||||||||||||||||||||
Sbjct: 10 tgatattggcctggttcactcaga 33
>RF00643;MIR171_1;AM486682.2/2891-2758 29760:Vitis vinifera
Length = 134
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 98 tttgattgagccgtgccaatatctcagt 125
||||||||||||||||||||||||||||
Sbjct: 100 tttgattgagccgtgccaatatctcagt 127
>RF00643;MIR171_1;AC150705.17/109871-109755 3880:Medicago truncatula
(barrel medic)
Length = 117
Score = 54.0 bits (27), Expect = 5e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 98 tttgattgagccgtgccaatatctcagtact 128
|||||||||||||||||||||||||| ||||
Sbjct: 83 tttgattgagccgtgccaatatctcactact 113
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 gatattggcctggttcactcaga 33
|||||||||||||||||||||||
Sbjct: 11 gatattggcctggttcactcaga 33
>RF00643;MIR171_1;AC189627.2/36180-36072 51351:Brassica rapa
subsp. pekinensis
Length = 109
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 10 tgatattggcctggttcactcagatc 35
||||||||||||||||||||||||||
Sbjct: 10 tgatattggcctggttcactcagatc 35
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 100 tgattgagccgtgccaatatctcagt 125
||||||||||| ||||||||||||||
Sbjct: 77 tgattgagccgcgccaatatctcagt 102
>RF00643;MIR171_1;EU549097.1/220-333 3702:Arabidopsis thaliana
(thale cress)
Length = 114
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 10 tgatattggcctggttcactcagatc 35
||||||||||||||||||||||||||
Sbjct: 10 tgatattggcctggttcactcagatc 35
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 100 tgattgagccgtgccaatatctcagtactc 129
||||||||||| ||||||||||||||||||
Sbjct: 82 tgattgagccgcgccaatatctcagtactc 111
>RF00643;MIR171_1;BABK01005968.1/2486-2599 34305:Lotus japonicus
Length = 114
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 98 tttgattgagccgtgccaatatctca 123
||||||||||||||||||||||||||
Sbjct: 80 tttgattgagccgtgccaatatctca 105
>RF00643;MIR171_1;BABK01108397.1/266-409 34305:Lotus japonicus
Length = 144
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 98 tttgattgagccgtgccaatatctca 123
||||||||||||||||||||||||||
Sbjct: 110 tttgattgagccgtgccaatatctca 135
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 gatattggcctggttcactcaga 33
|||||||||||||||||||||||
Sbjct: 11 gatattggcctggttcactcaga 33
>RF00643;MIR171_1;ABXC01000488.1/1154-1044 4558:Sorghum bicolor
(sorghum)
Length = 111
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 100 tgattgagccgtgccaatatctcagtactc 129
|||||||||||||||||||||| |||||||
Sbjct: 79 tgattgagccgtgccaatatcttagtactc 108
>RF00643;MIR171_1;EU549081.1/305-220 3702:Arabidopsis thaliana
(thale cress)
Length = 86
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 10 tgatattggcctggttcactcagat 34
|||||||||||||||||||||||||
Sbjct: 10 tgatattggcctggttcactcagat 34
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 100 tgattgagccgtgccaatatctcagt 125
||||||||||||| ||||||||||||
Sbjct: 54 tgattgagccgtgtcaatatctcagt 79
>RF00643;MIR171_1;AAAA02030424.1/14947-15083 39946:Oryza sativa
Indica Group
Length = 137
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 100 tgattgagccgtgccaatatctcag 124
|||||||||||||||||||||||||
Sbjct: 105 tgattgagccgtgccaatatctcag 129
>RF00643;MIR171_1;ABIM01004247.1/37375-37272 3649:Carica papaya
(papaya)
Length = 104
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 97 atttgattgagccgtgccaatatc 120
||||||||||||||||||||||||
Sbjct: 69 atttgattgagccgtgccaatatc 92
>RF00643;MIR171_1;EU549150.1/415-315 3702:Arabidopsis thaliana
(thale cress)
Length = 101
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 97 atttgattgagccgtgccaatatc 120
||||||||||||||||||||||||
Sbjct: 66 atttgattgagccgtgccaatatc 89
>RF00643;MIR171_1;AASG02000279.1/67999-67862 3988:Ricinus communis
(castor bean)
Length = 138
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 98 tttgattgagccgtgccaatatct 121
||||||||||||||||||||||||
Sbjct: 104 tttgattgagccgtgccaatatct 127
>RF00643;MIR171_1;AC134967.20/116067-116170 3880:Medicago truncatula
(barrel medic)
Length = 104
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 97 atttgattgagccgtgccaatatc 120
||||||||||||||||||||||||
Sbjct: 69 atttgattgagccgtgccaatatc 92
>RF00643;MIR171_1;AC219214.1/21177-21278 4081:Solanum lycopersicum
Length = 102
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 97 atttgattgagccgtgccaatatc 120
||||||||||||||||||||||||
Sbjct: 67 atttgattgagccgtgccaatatc 90
>RF00643;MIR171_1;ABIM01016020.1/2222-2123 3649:Carica papaya
(papaya)
Length = 100
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 98 tttgattgagccgtgccaatatc 120
|||||||||||||||||||||||
Sbjct: 66 tttgattgagccgtgccaatatc 88
>RF00643;MIR171_1;ABIM01020876.1/9287-9189 3649:Carica papaya
(papaya)
Length = 99
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 98 tttgattgagccgtgccaatatc 120
|||||||||||||||||||||||
Sbjct: 65 tttgattgagccgtgccaatatc 87
>RF00643;MIR171_1;AY728470.1/5-86 3694:Populus trichocarpa
Length = 82
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 98 tttgattgagccgtgccaatatc 120
|||||||||||||||||||||||
Sbjct: 58 tttgattgagccgtgccaatatc 80
>RF00643;MIR171_1;AASG02001674.1/19617-19518 3988:Ricinus communis
(castor bean)
Length = 100
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 98 tttgattgagccgtgccaatatc 120
|||||||||||||||||||||||
Sbjct: 66 tttgattgagccgtgccaatatc 88
>RF00643;MIR171_1;AASG02000735.1/28318-28416 3988:Ricinus communis
(castor bean)
Length = 99
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 98 tttgattgagccgtgccaatatc 120
|||||||||||||||||||||||
Sbjct: 65 tttgattgagccgtgccaatatc 87
>RF00643;MIR171_1;BABK01058807.1/722-623 34305:Lotus japonicus
Length = 100
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 98 tttgattgagccgtgccaatatc 120
|||||||||||||||||||||||
Sbjct: 66 tttgattgagccgtgccaatatc 88
>RF00643;MIR171_1;AM449096.1/12478-12578 29760:Vitis vinifera
Length = 101
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 98 tttgattgagccgtgccaatatc 120
|||||||||||||||||||||||
Sbjct: 67 tttgattgagccgtgccaatatc 89
>RF00643;MIR171_1;AM446221.1/52246-52149 29760:Vitis vinifera
Length = 98
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 98 tttgattgagccgtgccaatatc 120
|||||||||||||||||||||||
Sbjct: 64 tttgattgagccgtgccaatatc 86
>RF00643;MIR171_1;ABXC01004438.1/173968-173868 4558:Sorghum bicolor
(sorghum)
Length = 101
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 98 tttgattgagccgtgccaatatc 120
|||||||||||||||||||||||
Sbjct: 67 tttgattgagccgtgccaatatc 89
>RF00643;MIR171_1;ABXC01000089.1/209731-209588 4558:Sorghum bicolor
(sorghum)
Length = 144
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 98 tttgattgagccgtgccaatatc 120
|||||||||||||||||||||||
Sbjct: 110 tttgattgagccgtgccaatatc 132
>RF00643;MIR171_1;AY551250.1/5-106 4530:Oryza sativa (rice)
Length = 102
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 98 tttgattgagccgtgccaatatc 120
|||||||||||||||||||||||
Sbjct: 68 tttgattgagccgtgccaatatc 90
>RF00643;MIR171_1;AL606645.2/80760-80660 39947:Oryza sativa Japonica
Group
Length = 101
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 98 tttgattgagccgtgccaatatc 120
|||||||||||||||||||||||
Sbjct: 67 tttgattgagccgtgccaatatc 89
>RF00643;MIR171_1;AARH01001039.1/225464-225596 3694:Populus
trichocarpa
Length = 133
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 100 tgattgagccgtgccaatatct 121
||||||||||||||||||||||
Sbjct: 101 tgattgagccgtgccaatatct 122
>RF00643;MIR171_1;CR962130.3/48254-48370 3880:Medicago truncatula
(barrel medic)
Length = 117
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 98 tttgattgagccgtgccaatat 119
||||||||||||||||||||||
Sbjct: 83 tttgattgagccgtgccaatat 104
>RF00643;MIR171_1;BT069726.1/119-252 4577:Zea mays
Length = 134
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 99 ttgattgagccgtgccaatatc 120
||||||||||||||||||||||
Sbjct: 101 ttgattgagccgtgccaatatc 122
>RF00643;MIR171_1;BT018211.1/119-253 4577:Zea mays
Length = 135
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 99 ttgattgagccgtgccaatatc 120
||||||||||||||||||||||
Sbjct: 102 ttgattgagccgtgccaatatc 123
>RF00643;MIR171_1;AC215662.2/9608-9473 4537:Oryza punctata
Length = 136
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 100 tgattgagccgtgccaatatct 121
||||||||||||||||||||||
Sbjct: 104 tgattgagccgtgccaatatct 125
>RF00643;MIR171_1;AAAA02007796.1/27966-27846 39946:Oryza sativa
Indica Group
Length = 121
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 100 tgattgagccgtgccaatatct 121
||||||||||||||||||||||
Sbjct: 89 tgattgagccgtgccaatatct 110
>RF00643;MIR171_1;AP008209.1/1950936-1951056 39947:Oryza sativa
Japonica Group
Length = 121
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 100 tgattgagccgtgccaatatct 121
||||||||||||||||||||||
Sbjct: 89 tgattgagccgtgccaatatct 110
