miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00452;mir-172;AARH01003915.1/155600-155740 3694:Populus
trichocarpa
Length = 141
Score = 278 bits (140), Expect = 2e-74
Identities = 140/140 (100%)
Strand = Plus / Plus
Query: 1 ttgtttgcgggtggagcatcatcaagattcacatgcaaatgcacggccggtgatgttaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttgtttgcgggtggagcatcatcaagattcacatgcaaatgcacggccggtgatgttaag 60
Query: 61 agttaaatctttctttgtttctgttcatctgccaaagttctttggaagtgagaatcttga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 agttaaatctttctttgtttctgttcatctgccaaagttctttggaagtgagaatcttga 120
Query: 121 tgatgctgcatcggcaataa 140
||||||||||||||||||||
Sbjct: 121 tgatgctgcatcggcaataa 140
>RF00452;mir-172;AC182714.2/88903-88742 3694:Populus trichocarpa
Length = 162
Score = 131 bits (66), Expect = 3e-30
Identities = 72/74 (97%)
Strand = Plus / Plus
Query: 67 atctttctttgtttctgttcatctgccaaagttctttggaagtgagaatcttgatgatgc 126
|||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88 atctttctttctttctgatcatctgccaaagttctttggaagtgagaatcttgatgatgc 147
Query: 127 tgcatcggcaataa 140
||||||||||||||
Sbjct: 148 tgcatcggcaataa 161
Score = 67.9 bits (34), Expect = 3e-11
Identities = 49/54 (90%)
Strand = Plus / Plus
Query: 1 ttgtttgcgggtggagcatcatcaagattcacatgcaaatgcacggccggtgat 54
||||||||||||| |||||| ||||||||||||||||||||| ||||| ||||
Sbjct: 1 ttgtttgcgggtgctgcatcaccaagattcacatgcaaatgcatggccgatgat 54
>RF00452;mir-172;AASG02011039.1/5310-5468 3988:Ricinus communis
(castor bean)
Length = 159
Score = 85.7 bits (43), Expect = 1e-16
Identities = 52/55 (94%)
Strand = Plus / Plus
Query: 1 ttgtttgcgggtggagcatcatcaagattcacatgcaaatgcacggccggtgatg 55
||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct: 1 ttgtttgcgggtgtagcatcatcaagattcacatgcaaatgcacggttggtgatg 55
Score = 63.9 bits (32), Expect = 5e-10
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 101 tttggaagtgagaatcttgatgatgctgcatcggcaataa 140
|||| ||||||||||||||||||||||||||| |||||||
Sbjct: 119 tttgaaagtgagaatcttgatgatgctgcatcagcaataa 158
>RF00452;mir-172;ABIM01030483.1/4658-4870 3649:Carica papaya
(papaya)
Length = 213
Score = 73.8 bits (37), Expect = 6e-13
Identities = 46/49 (93%)
Strand = Plus / Plus
Query: 91 gccaaagttctttggaagtgagaatcttgatgatgctgcatcggcaata 139
|||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct: 163 gccaaagttctttgagagtgagaatcttgatgatgctgcatcgacaata 211
Score = 58.0 bits (29), Expect = 3e-08
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 4 tttgcgggtggagcatcatcaagattcacatgcaaat 40
|||| ||||| ||||||||||||||||||||||||||
Sbjct: 4 tttgtgggtgtagcatcatcaagattcacatgcaaat 40
>RF00452;mir-172;CAAP02003282.1/14594-14705 29760:Vitis vinifera
Length = 112
Score = 67.9 bits (34), Expect = 3e-11
Identities = 43/46 (93%)
Strand = Plus / Plus
Query: 1 ttgtttgcgggtggagcatcatcaagattcacatgcaaatgcacgg 46
||||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 1 ttgtttgcgcatgtagcatcatcaagattcacatgcaaatgcacgg 46
Score = 63.9 bits (32), Expect = 5e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 109 tgagaatcttgatgatgctgcatcggcaataa 140
||||||||||||||||||||||||||||||||
Sbjct: 80 tgagaatcttgatgatgctgcatcggcaataa 111
>RF00452;mir-172;AM457961.2/1662-1782 29760:Vitis vinifera
Length = 121
Score = 61.9 bits (31), Expect = 2e-09
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 1 ttgtttgcgggtggagcatcatcaagattcacatgcaaa 39
|||||||| |||| |||||||||||||||||||||||||
Sbjct: 1 ttgtttgcaggtgtagcatcatcaagattcacatgcaaa 39
Score = 61.9 bits (31), Expect = 2e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 109 tgagaatcttgatgatgctgcatcggcaata 139
|||||||||||||||||||||||||||||||
Sbjct: 89 tgagaatcttgatgatgctgcatcggcaata 119
>RF00452;mir-172;CAAP02000586.1/29172-29291 29760:Vitis vinifera
Length = 120
Score = 61.9 bits (31), Expect = 2e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 109 tgagaatcttgatgatgctgcatcggcaata 139
|||||||||||||||||||||||||||||||
Sbjct: 88 tgagaatcttgatgatgctgcatcggcaata 118
Score = 56.0 bits (28), Expect = 1e-07
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 1 ttgtttgcgggtggagcatcatcaagattcacatgc 36
|||||||| |||| ||||||||||||||||||||||
Sbjct: 1 ttgtttgcaggtgtagcatcatcaagattcacatgc 36
>RF00452;mir-172;FM163855.1/191-306 3702:Arabidopsis thaliana (thale
cress)
Length = 116
Score = 60.0 bits (30), Expect = 8e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 109 tgagaatcttgatgatgctgcatcggcaat 138
||||||||||||||||||||||||||||||
Sbjct: 84 tgagaatcttgatgatgctgcatcggcaat 113
>RF00452;mir-172;BABK01027900.1/1116-1276 34305:Lotus japonicus
Length = 161
Score = 60.0 bits (30), Expect = 8e-09
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 99 tctttggaagtgagaatcttgatgatgctgcatcggcaataa 140
||||| ||||||||||||||||||||||||||| ||| ||||
Sbjct: 119 tcttttgaagtgagaatcttgatgatgctgcattggccataa 160
Score = 54.0 bits (27), Expect = 5e-07
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 1 ttgtttgcgggtggagcatcatcaagattcacatgcaaatgca 43
|||||||| | || |||| ||||||||||||||||||||||||
Sbjct: 1 ttgtttgctgatgtagcaccatcaagattcacatgcaaatgca 43
>RF00452;mir-172;BABK01012763.1/1927-2053 34305:Lotus japonicus
Length = 127
Score = 58.0 bits (29), Expect = 3e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 1 ttgtttgcgggtggagcatcatcaagattcaca 33
|||||||| ||||||||||||||||||||||||
Sbjct: 1 ttgtttgctggtggagcatcatcaagattcaca 33
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 109 tgagaatcttgatgatgctgca 130
||||||||||||||||||||||
Sbjct: 100 tgagaatcttgatgatgctgca 121
>RF00452;mir-172;ABIM01001078.1/716-916 3649:Carica papaya
(papaya)
Length = 201
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 2 tgtttgcgggtggagcatcatcaagattcaca 33
||||||||| ||||||||||||||||||||||
Sbjct: 2 tgtttgcggatggagcatcatcaagattcaca 33
Score = 50.1 bits (25), Expect = 8e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 112 gaatcttgatgatgctgcatcggcaataa 140
||||||||||||||||||| |||||||||
Sbjct: 172 gaatcttgatgatgctgcagcggcaataa 200
>RF00452;mir-172;ABIM01012229.1/3274-3102 3649:Carica papaya
(papaya)
Length = 173
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 109 tgagaatcttgatgatgctgcatcggcaataa 140
||||||||||||||||||||||||||| ||||
Sbjct: 141 tgagaatcttgatgatgctgcatcggccataa 172
>RF00452;mir-172;AARH01003539.1/168033-168162 3694:Populus
trichocarpa
Length = 130
Score = 56.0 bits (28), Expect = 1e-07
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 1 ttgtttgcgggtggagcatcatcaagattcacatgcaaat 40
|||||||| |||| |||||||||||||||||||| |||||
Sbjct: 1 ttgtttgcaggtgcagcatcatcaagattcacattcaaat 40
Score = 50.1 bits (25), Expect = 8e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 108 gtgagaatcttgatgatgctgcatc 132
|||||||||||||||||||||||||
Sbjct: 97 gtgagaatcttgatgatgctgcatc 121
>RF00452;mir-172;BABK01107385.1/174-85 34305:Lotus japonicus
Length = 90
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 109 tgagaatcttgatgatgctgcatcggcaataa 140
|||||||||||||||||||||||| |||||||
Sbjct: 58 tgagaatcttgatgatgctgcatcagcaataa 89
>RF00452;mir-172;AM481129.2/11694-11833 29760:Vitis vinifera
Length = 140
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 2 tgtttgcgggtggagcatcatcaagattcaca 33
||||||||| ||||||||||||||||||||||
Sbjct: 2 tgtttgcggatggagcatcatcaagattcaca 33
Score = 50.1 bits (25), Expect = 8e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 112 gaatcttgatgatgctgcatcggcaataa 140
||||||||||||||||||| |||||||||
Sbjct: 111 gaatcttgatgatgctgcagcggcaataa 139
>RF00452;mir-172;AARH01004415.1/120029-119901 3694:Populus
trichocarpa
Length = 129
Score = 54.0 bits (27), Expect = 5e-07
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 1 ttgtttgcgggtggagcatcatcaagattcacatgcaaa 39
|||||||| |||| |||||||||||||||||||| ||||
Sbjct: 1 ttgtttgcaggtgcagcatcatcaagattcacattcaaa 39
Score = 54.0 bits (27), Expect = 5e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 98 ttctttggaagtgagaatcttgatgatgctgcatc 132
||||||| | |||||||||||||||||||||||||
Sbjct: 86 ttctttgaaggtgagaatcttgatgatgctgcatc 120
>RF00452;mir-172;AASG02049897.1/697-856 3988:Ricinus communis
(castor bean)
Length = 160
Score = 54.0 bits (27), Expect = 5e-07
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 1 ttgtttgcgggtggagcatcatcaagattcacatgcaaa 39
|||||||| |||| ||||||| |||||||||||||||||
Sbjct: 1 ttgtttgcaggtgcagcatcaccaagattcacatgcaaa 39
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 99 tctttggaagtgagaatcttgatgatgctgcatc 132
|||||| | |||||||||||||||||||||||||
Sbjct: 118 tctttgaaggtgagaatcttgatgatgctgcatc 151
>RF00452;mir-172;EU549232.1/232-344 3702:Arabidopsis thaliana (thale
cress)
Length = 113
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 109 tgagaatcttgatgatgctgcatcggcaat 138
|||||||||||||||||||||| |||||||
Sbjct: 81 tgagaatcttgatgatgctgcagcggcaat 110
>RF00452;mir-172;AARH01003860.1/86743-86610 3694:Populus trichocarpa
Length = 134
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 112 gaatcttgatgatgctgcatcggcaa 137
||||||||||||||||||||||||||
Sbjct: 105 gaatcttgatgatgctgcatcggcaa 130
>RF00452;mir-172;AARH01000428.1/33766-33584 3694:Populus trichocarpa
Length = 183
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 112 gaatcttgatgatgctgcatcggcaa 137
||||||||||||||||||||||||||
Sbjct: 154 gaatcttgatgatgctgcatcggcaa 179
>RF00452;mir-172;AARH01004394.1/257332-257189 3694:Populus
trichocarpa
Length = 144
Score = 50.1 bits (25), Expect = 8e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 112 gaatcttgatgatgctgcatcggcaataa 140
||||||||||||||||||| |||||||||
Sbjct: 115 gaatcttgatgatgctgcagcggcaataa 143
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 tggagcatcatcaagattcaca 33
||||||||||||||||||||||
Sbjct: 12 tggagcatcatcaagattcaca 33
>RF00452;mir-172;AASG02005670.1/14724-14879 3988:Ricinus communis
(castor bean)
Length = 156
Score = 50.1 bits (25), Expect = 8e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 112 gaatcttgatgatgctgcatcggcaataa 140
||||||||||||||||||| |||||||||
Sbjct: 127 gaatcttgatgatgctgcagcggcaataa 155
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 2 tgtttgcgggtggagcatcatcaagattcaca 33
||||||| | ||||||||||||||||||||||
Sbjct: 2 tgtttgctgatggagcatcatcaagattcaca 33
>RF00452;mir-172;AASG02019478.1/457-599 3988:Ricinus communis
(castor bean)
Length = 143
Score = 50.1 bits (25), Expect = 8e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 109 tgagaatcttgatgatgctgcatcggcaa 137
|||||||||||||||||||||||| ||||
Sbjct: 111 tgagaatcttgatgatgctgcatcagcaa 139
>RF00452;mir-172;BABK01039752.1/451-284 34305:Lotus japonicus
Length = 168
Score = 50.1 bits (25), Expect = 8e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 109 tgagaatcttgatgatgctgcatcggcaa 137
|||||||||||||||||||||||| ||||
Sbjct: 136 tgagaatcttgatgatgctgcatcagcaa 164
>RF00452;mir-172;ABXC01006306.1/12162-12041 4558:Sorghum bicolor
(sorghum)
Length = 122
Score = 50.1 bits (25), Expect = 8e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 109 tgagaatcttgatgatgctgcatcggcaa 137
|||||||||||||||||||||||| ||||
Sbjct: 90 tgagaatcttgatgatgctgcatcagcaa 118
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 5 ttgcgggtggagcatcatcaagattcacat 34
|||| |||| ||||||||||||||||||||
Sbjct: 5 ttgcaggtgcagcatcatcaagattcacat 34
>RF00452;mir-172;EU869069.1/352-463 39946:Oryza sativa Indica Group
Length = 112
Score = 50.1 bits (25), Expect = 8e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 109 tgagaatcttgatgatgctgcatcggcaa 137
|||||||||||||||||||||||| ||||
Sbjct: 80 tgagaatcttgatgatgctgcatcagcaa 108
>RF00452;mir-172;AC189388.2/19492-19378 51351:Brassica rapa subsp.
pekinensis
Length = 115
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 109 tgagaatcttgatgatgctgcatc 132
||||||||||||||||||||||||
Sbjct: 83 tgagaatcttgatgatgctgcatc 106
>RF00452;mir-172;FM163882.1/53-161 3702:Arabidopsis thaliana (thale
cress)
Length = 109
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 109 tgagaatcttgatgatgctgcatc 132
||||||||||||||||||||||||
Sbjct: 77 tgagaatcttgatgatgctgcatc 100
>RF00452;mir-172;EU945504.1/992-1139 4577:Zea mays
Length = 148
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 109 tgagaatcttgatgatgctgcatc 132
||||||||||||||||||||||||
Sbjct: 116 tgagaatcttgatgatgctgcatc 139
>RF00452;mir-172;ABXC01002997.1/14893-14755 4558:Sorghum bicolor
(sorghum)
Length = 139
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 109 tgagaatcttgatgatgctgcatc 132
||||||||||||||||||||||||
Sbjct: 107 tgagaatcttgatgatgctgcatc 130
>RF00452;mir-172;ABXC01001026.1/165015-165125 4558:Sorghum bicolor
(sorghum)
Length = 111
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 109 tgagaatcttgatgatgctgcatc 132
||||||||||||||||||||||||
Sbjct: 79 tgagaatcttgatgatgctgcatc 102
>RF00452;mir-172;AP006162.2/95640-95748 39947:Oryza sativa Japonica
Group
Length = 109
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 109 tgagaatcttgatgatgctgcatc 132
||||||||||||||||||||||||
Sbjct: 77 tgagaatcttgatgatgctgcatc 100
>RF00452;mir-172;EU549250.1/242-366 3702:Arabidopsis thaliana (thale
cress)
Length = 125
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 107 agtgagaatcttgatgatgctgcatcggcaa 137
|||| ||||||||||||||||||||| ||||
Sbjct: 91 agtgggaatcttgatgatgctgcatcagcaa 121
>RF00452;mir-172;CAAP02002084.1/47016-46906 29760:Vitis vinifera
Length = 111
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 109 tgagaatcttgatgatgctgcat 131
|||||||||||||||||||||||
Sbjct: 79 tgagaatcttgatgatgctgcat 101
>RF00452;mir-172;AP003298.3/17210-16973 39947:Oryza sativa Japonica
Group
Length = 238
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 112 gaatcttgatgatgctgcatcgg 134
|||||||||||||||||||||||
Sbjct: 209 gaatcttgatgatgctgcatcgg 231
>RF00452;mir-172;AC189648.2/24074-23978 51351:Brassica rapa subsp.
pekinensis
Length = 97
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 112 gaatcttgatgatgctgcatcggcaa 137
||||||||||||||||||||| ||||
Sbjct: 68 gaatcttgatgatgctgcatcagcaa 93
>RF00452;mir-172;EU549227.1/243-121 3702:Arabidopsis thaliana
(thale cress)
Length = 123
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 tggagcatcatcaagattcaca 33
||||||||||||||||||||||
Sbjct: 12 tggagcatcatcaagattcaca 33
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 109 tgagaatcttgatgatgctgca 130
||||||||||||||||||||||
Sbjct: 91 tgagaatcttgatgatgctgca 112
