miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54936_zma-miR159g:pmrd
Length = 180
Score = 167 bits (84), Expect = 5e-42
Identities = 154/175 (88%), Gaps = 3/175 (1%)
Strand = Plus / Plus
Query: 27 gaagagctcccttcgatccaatccaggaggggaagtggtcggatgcagctgccggttcat 86
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1 gaagagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcat 60
Query: 87 ggatacctgtctggtgcatgcagtg--tggtaatagcctgcgcacctgcatcggtttgca 144
|||||||| ||||||||| ||| || | | | ||| |||| ||||| ||| ||||
Sbjct: 61 ggatacctctctggtgca-gcaatggccgctgctcacctctgcacttgcatgggtgtgca 119
Query: 145 tgacccgggagatgaacctgccagcgtctttccctcgtgcttggattgaagggag 199
||||||||||||||| || |||| | |||||||||||||||||||||||||||||
Sbjct: 120 tgacccgggagatgagcccgccatcatctttccctcgtgcttggattgaagggag 174
>54932_zma-miR159c:pmrd
Length = 217
Score = 167 bits (84), Expect = 5e-42
Identities = 154/175 (88%), Gaps = 3/175 (1%)
Strand = Plus / Plus
Query: 27 gaagagctcccttcgatccaatccaggaggggaagtggtcggatgcagctgccggttcat 86
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 20 gaagagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcat 79
Query: 87 ggatacctgtctggtgcatgcagtg--tggtaatagcctgcgcacctgcatcggtttgca 144
|||||||| ||||||||| ||| || | | | ||| |||| ||||| ||| ||||
Sbjct: 80 ggatacctctctggtgca-gcaatggccgctgctcacctctgcacttgcatgggtgtgca 138
Query: 145 tgacccgggagatgaacctgccagcgtctttccctcgtgcttggattgaagggag 199
||||||||||||||| || |||| | |||||||||||||||||||||||||||||
Sbjct: 139 tgacccgggagatgagcccgccatcatctttccctcgtgcttggattgaagggag 193
>55054_zma-miR319m:pmrd
Length = 178
Score = 165 bits (83), Expect = 2e-41
Identities = 153/174 (87%), Gaps = 3/174 (1%)
Strand = Plus / Plus
Query: 28 aagagctcccttcgatccaatccaggaggggaagtggtcggatgcagctgccggttcatg 87
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1 aagagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatg 60
Query: 88 gatacctgtctggtgcatgcagtg--tggtaatagcctgcgcacctgcatcggtttgcat 145
||||||| ||||||||| ||| || | | | ||| |||| ||||| ||| |||||
Sbjct: 61 gatacctctctggtgca-gcaatggccgctgctcacctctgcacttgcatgggtgtgcat 119
Query: 146 gacccgggagatgaacctgccagcgtctttccctcgtgcttggattgaagggag 199
|||||||||||||| || |||| | |||||||||||||||||||||||||||||
Sbjct: 120 gacccgggagatgagcccgccatcatctttccctcgtgcttggattgaagggag 173
>54403_sbi-miR159b:pmrd
Length = 253
Score = 159 bits (80), Expect = 1e-39
Identities = 153/174 (87%), Gaps = 5/174 (2%)
Strand = Plus / Plus
Query: 28 aagagctcccttcgatccaatccaggaggggaagtggtcggatgcagctgccggttcatg 87
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 59 aagagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatg 118
Query: 88 gatacctgtctggtgcatgcagtg--tggtaatagcctgcgcacctgcatcggtttgcat 145
||| ||| ||||||||| ||| || || | | ||| |||| ||||| ||| |||||
Sbjct: 119 gatgcctctctggtgca-gcaatgactgatgctcacct--gcacttgcatgggtgtgcat 175
Query: 146 gacccgggagatgaacctgccagcgtctttccctcgtgcttggattgaagggag 199
||||||||||||||||| ||| | |||||||||||||||||||||||||||||
Sbjct: 176 gacccgggagatgaacccaccatcatctttccctcgtgcttggattgaagggag 229
>54630_sof-miR159c:pmrd
Length = 238
Score = 155 bits (78), Expect = 2e-38
Identities = 153/174 (87%), Gaps = 3/174 (1%)
Strand = Plus / Plus
Query: 27 gaagagctcccttcgatccaatccaggaggggaagtggtcggatgcagctgccggttcat 86
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 43 gaagagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcat 102
Query: 87 ggatacctgtctggtgcatgcagtgtggtaatagcctgc-gcacctgcatcggtttgcat 145
|||| ||| ||||||||| ||| || |||| | | |||| ||||| ||| |||||
Sbjct: 103 ggatgcctctctggtgca-gcaatg-actaatgctcacctgcacttgcatgggtgtgcat 160
Query: 146 gacccgggagatgaacctgccagcgtctttccctcgtgcttggattgaagggag 199
||||||||||||||||| ||| | |||||||||||||||||||||||||||||
Sbjct: 161 gacccgggagatgaacccaccatcatctttccctcgtgcttggattgaagggag 214
>54643_sof-miR319b:pmrd
Length = 176
Score = 153 bits (77), Expect = 7e-38
Identities = 152/173 (87%), Gaps = 3/173 (1%)
Strand = Plus / Plus
Query: 28 aagagctcccttcgatccaatccaggaggggaagtggtcggatgcagctgccggttcatg 87
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1 aagagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatg 60
Query: 88 gatacctgtctggtgcatgcagtgtggtaatagcctgc-gcacctgcatcggtttgcatg 146
||| ||| ||||||||| ||| || |||| | | |||| ||||| ||| ||||||
Sbjct: 61 gatgcctctctggtgca-gcaatg-actaatgctcacctgcacttgcatgggtgtgcatg 118
Query: 147 acccgggagatgaacctgccagcgtctttccctcgtgcttggattgaagggag 199
|||||||||||||||| ||| | |||||||||||||||||||||||||||||
Sbjct: 119 acccgggagatgaacccaccatcatctttccctcgtgcttggattgaagggag 171
>54933_zma-miR159d:pmrd
Length = 217
Score = 137 bits (69), Expect = 4e-33
Identities = 152/177 (85%), Gaps = 7/177 (3%)
Strand = Plus / Plus
Query: 27 gaagagctcccttcgatccaatccaggaggggaagtggtcggatgcagctgccggttcat 86
||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct: 20 gaagagctcccttcgatccaatccaggagggaaagtggtcggctgcagctgccggttcat 79
Query: 87 ggatacctgtctggtgcatgcagt----gtggtaatagcctgcgcacctgcatcggtttg 142
|||||||| ||||||||| ||| | | | | | ||| |||| ||||| ||| ||
Sbjct: 80 ggatacctctctggtgca-gcaatggccgagatgctcacct--gcacttgcatgggtgtg 136
Query: 143 catgacccgggagatgaacctgccagcgtctttccctcgtgcttggattgaagggag 199
|||||||||||||| ||||| ||| | |||||||||||||||||||||||||||||
Sbjct: 137 catgacccgggagacgaaccgaccatcatctttccctcgtgcttggattgaagggag 193
>54935_zma-miR159f:pmrd
Length = 181
Score = 129 bits (65), Expect = 1e-30
Identities = 151/176 (85%), Gaps = 4/176 (2%)
Strand = Plus / Plus
Query: 27 gaagagctcccttcgatccaatccagg-aggggaagtggtcggatgcagctgccggttca 85
||||||||||||||||||||||||||| |||||||||| |||| ||||||||||||||||
Sbjct: 1 gaagagctcccttcgatccaatccagggaggggaagtgttcggttgcagctgccggttca 60
Query: 86 tggatacctgtctggtgcatgcagtg--tggtaatagcctgcgcacctgcatcggtttgc 143
||||||| | ||||||||| ||| || | | ||| |||| ||||| ||| |||
Sbjct: 61 tggatacttctctggtgca-gcaatggccgcagctcacctctgcacttgcatgggtgtgc 119
Query: 144 atgacccgggagatgaacctgccagcgtctttccctcgtgcttggattgaagggag 199
|||||||||||||||| || |||| | |||||||||||||||||||||||||||||
Sbjct: 120 atgacccgggagatgagcccgccatcatctttccctcgtgcttggattgaagggag 175
>48824_osa-miR159f:pmrd
Length = 188
Score = 121 bits (61), Expect = 3e-28
Identities = 70/73 (95%)
Strand = Plus / Plus
Query: 22 aagaagaagagctcccttcgatccaatccaggaggggaagtggtcggatgcagctgccgg 81
||||||| |||||||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct: 5 aagaagacgagctcccttcgatccaatccaggagaggaagtggtaggatgcagctgccgg 64
Query: 82 ttcatggatacct 94
|||||||||||||
Sbjct: 65 ttcatggatacct 77
>48823_osa-miR159e:pmrd
Length = 191
Score = 107 bits (54), Expect = 4e-24
Identities = 70/74 (94%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 22 aagaagaagagctccctt-cgatccaatccaggaggggaagtggtcggatgcagctgccg 80
|||||||||||||||||| ||||||||| |||||| ||||||||| ||||||||||||||
Sbjct: 5 aagaagaagagctccctttcgatccaattcaggagaggaagtggtaggatgcagctgccg 64
Query: 81 gttcatggatacct 94
||||||||||||||
Sbjct: 65 gttcatggatacct 78
>48822_osa-miR159d:pmrd
Length = 189
Score = 97.6 bits (49), Expect = 4e-21
Identities = 61/65 (93%)
Strand = Plus / Plus
Query: 30 gagctcccttcgatccaatccaggaggggaagtggtcggatgcagctgccggttcatgga 89
||||||| ||||||||||| |||||| ||||||||| |||||||||||||||||||||||
Sbjct: 13 gagctcctttcgatccaattcaggagaggaagtggtgggatgcagctgccggttcatgga 72
Query: 90 tacct 94
|||||
Sbjct: 73 tacct 77
>48821_osa-miR159c:pmrd
Length = 197
Score = 93.7 bits (47), Expect = 6e-20
Identities = 65/71 (91%)
Strand = Plus / Plus
Query: 24 gaagaagagctcccttcgatccaatccaggaggggaagtggtcggatgcagctgccggtt 83
||||| ||||||| ||||||||||| |||||| ||||||||| |||||||||||||| ||
Sbjct: 7 gaagaggagctcctttcgatccaattcaggagaggaagtggtaggatgcagctgccgatt 66
Query: 84 catggatacct 94
|||||||||||
Sbjct: 67 catggatacct 77
