miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;EU968889.1/70-269 4577:Zea mays
Length = 200
Score = 167 bits (84), Expect = 9e-41
Identities = 154/175 (88%), Gaps = 3/175 (1%)
Strand = Plus / Plus
Query: 27 gaagagctcccttcgatccaatccaggaggggaagtggtcggatgcagctgccggttcat 86
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 10 gaagagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcat 69
Query: 87 ggatacctgtctggtgcatgcagtg--tggtaatagcctgcgcacctgcatcggtttgca 144
|||||||| ||||||||| ||| || | | | ||| |||| ||||| ||| ||||
Sbjct: 70 ggatacctctctggtgca-gcaatggccgctgctcacctctgcacttgcatgggtgtgca 128
Query: 145 tgacccgggagatgaacctgccagcgtctttccctcgtgcttggattgaagggag 199
||||||||||||||| || |||| | |||||||||||||||||||||||||||||
Sbjct: 129 tgacccgggagatgagcccgccatcatctttccctcgtgcttggattgaagggag 183
>RF00638;MIR159;ABXC01001681.1/9004-8807 4558:Sorghum bicolor
(sorghum)
Length = 198
Score = 159 bits (80), Expect = 2e-38
Identities = 153/174 (87%), Gaps = 5/174 (2%)
Strand = Plus / Plus
Query: 28 aagagctcccttcgatccaatccaggaggggaagtggtcggatgcagctgccggttcatg 87
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 11 aagagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatg 70
Query: 88 gatacctgtctggtgcatgcagtg--tggtaatagcctgcgcacctgcatcggtttgcat 145
||| ||| ||||||||| ||| || || | | ||| |||| ||||| ||| |||||
Sbjct: 71 gatgcctctctggtgca-gcaatgactgatgctcacct--gcacttgcatgggtgtgcat 127
Query: 146 gacccgggagatgaacctgccagcgtctttccctcgtgcttggattgaagggag 199
||||||||||||||||| ||| | |||||||||||||||||||||||||||||
Sbjct: 128 gacccgggagatgaacccaccatcatctttccctcgtgcttggattgaagggag 181
>RF00638;MIR159;AY551213.1/14-203 4530:Oryza sativa (rice)
Length = 190
Score = 121 bits (61), Expect = 5e-27
Identities = 70/73 (95%)
Strand = Plus / Plus
Query: 22 aagaagaagagctcccttcgatccaatccaggaggggaagtggtcggatgcagctgccgg 81
||||||| |||||||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct: 5 aagaagacgagctcccttcgatccaatccaggagaggaagtggtaggatgcagctgccgg 64
Query: 82 ttcatggatacct 94
|||||||||||||
Sbjct: 65 ttcatggatacct 77
>RF00638;MIR159;EU869146.1/267-75 39946:Oryza sativa Indica Group
Length = 193
Score = 107 bits (54), Expect = 7e-23
Identities = 70/74 (94%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 22 aagaagaagagctccctt-cgatccaatccaggaggggaagtggtcggatgcagctgccg 80
|||||||||||||||||| ||||||||| |||||| ||||||||| ||||||||||||||
Sbjct: 5 aagaagaagagctccctttcgatccaattcaggagaggaagtggtaggatgcagctgccg 64
Query: 81 gttcatggatacct 94
||||||||||||||
Sbjct: 65 gttcatggatacct 78
>RF00638;MIR159;EU869145.1/283-93 39946:Oryza sativa Indica Group
Length = 191
Score = 97.6 bits (49), Expect = 7e-20
Identities = 61/65 (93%)
Strand = Plus / Plus
Query: 30 gagctcccttcgatccaatccaggaggggaagtggtcggatgcagctgccggttcatgga 89
||||||| ||||||||||| |||||| ||||||||| |||||||||||||||||||||||
Sbjct: 13 gagctcctttcgatccaattcaggagaggaagtggtgggatgcagctgccggttcatgga 72
Query: 90 tacct 94
|||||
Sbjct: 73 tacct 77
>RF00638;MIR159;EU869143.1/162-369 39946:Oryza sativa Indica Group
Length = 208
Score = 93.7 bits (47), Expect = 1e-18
Identities = 65/71 (91%)
Strand = Plus / Plus
Query: 24 gaagaagagctcccttcgatccaatccaggaggggaagtggtcggatgcagctgccggtt 83
||||| ||||||| ||||||||||| |||||| ||||||||| |||||||||||||| ||
Sbjct: 7 gaagaggagctcctttcgatccaattcaggagaggaagtggtaggatgcagctgccgatt 66
Query: 84 catggatacct 94
|||||||||||
Sbjct: 67 catggatacct 77
>RF00638;MIR159;AP008207.1/6555244-6555046 39947:Oryza sativa
Japonica Group
Length = 199
Score = 93.7 bits (47), Expect = 1e-18
Identities = 65/71 (91%)
Strand = Plus / Plus
Query: 24 gaagaagagctcccttcgatccaatccaggaggggaagtggtcggatgcagctgccggtt 83
||||| ||||||| ||||||||||| |||||| ||||||||| |||||||||||||| ||
Sbjct: 7 gaagaggagctcctttcgatccaattcaggagaggaagtggtaggatgcagctgccgatt 66
Query: 84 catggatacct 94
|||||||||||
Sbjct: 67 catggatacct 77
